Literature DB >> 6987208

Purification and thermal stability of several amino acid-specific tRNAs from an extreme thermophile, Thermus thermophilus HB8.

K Watanabe, T Oshima, K Iijima, Z Yamaizumi, S Nishimura.   

Abstract

Three species of methionine tRNAs and phenylalanine, tyrosine, and isoleucine tRNAs were purified from an extreme thermophile, Thermus thermophilus HB8. Formylation studies of the three methionine tRNAs and their codon-specific binding activities to ribosomes showed that two of them (named tRNAf1Met and tRNAf2Met) were initiator tRNAs and the other (named tRNAmMet) was a non-initiator. The tRNAs from T. thermophilus all had melting temperatures of up to ten degrees higher than the corresponding species from E. coli. Most of the species also had slightly higher G+C contents than the corresponding species of E. coli, and each of them contained one mol each of the modified nucleosides, O2'-methylguanosine (Gm), 2-thioribothymidine (s2T), and 1-methyladenosine (m1A). Their high melting temperatures could be explained by their high G+C contents and the presence of the modified nucleosides, espically s2T. Comparison of the melting temperatures of T. thermophilus tRNAf2Met with those of E. coli tRNAfMet and tRNAmMet at different magnesium concentrations showed that magnesium was also a factor in the thermostability of the thermophile tRNA.

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Year:  1980        PMID: 6987208     DOI: 10.1093/oxfordjournals.jbchem.a132713

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  19 in total

1.  Archaeal adaptation to higher temperatures revealed by genomic sequence of Thermoplasma volcanium.

Authors:  T Kawashima; N Amano; H Koike; S Makino; S Higuchi; Y Kawashima-Ohya; K Watanabe; M Yamazaki; K Kanehori; T Kawamoto; T Nunoshiba; Y Yamamoto; H Aramaki; K Makino; M Suzuki
Journal:  Proc Natl Acad Sci U S A       Date:  2000-12-19       Impact factor: 11.205

2.  Phosphorothioate-containing RNAs show mRNA activity in the prokaryotic translation systems in vitro.

Authors:  T Ueda; H Tohda; N Chikazumi; F Eckstein; K Watanabe
Journal:  Nucleic Acids Res       Date:  1991-02-11       Impact factor: 16.971

3.  Expression of bovine mitochondrial tRNASer GCU derivatives in Escherichia coli.

Authors:  I Hayashi; G Kawai; K Watanabe
Journal:  Nucleic Acids Res       Date:  1997-09-01       Impact factor: 16.971

4.  Comparison of crystal structure interactions and thermodynamics for stabilizing mutations in the Tetrahymena ribozyme.

Authors:  Feng Guo; Anne R Gooding; Thomas R Cech
Journal:  RNA       Date:  2006-01-23       Impact factor: 4.942

5.  Analysis of the gene encoding the RNA subunit of ribonuclease P from T. thermophilus HB8.

Authors:  R K Hartmann; V A Erdmann
Journal:  Nucleic Acids Res       Date:  1991-11-11       Impact factor: 16.971

6.  Comparison of tRNA conformation during different phases of reproduction.

Authors:  M Sarkar; M Vinayak
Journal:  Mol Biol Rep       Date:  1998-03       Impact factor: 2.316

7.  Post-transcriptional modification in archaeal tRNAs: identities and phylogenetic relations of nucleotides from mesophilic and hyperthermophilic Methanococcales.

Authors:  J A McCloskey; D E Graham; S Zhou; P F Crain; M Ibba; J Konisky; D Söll; G J Olsen
Journal:  Nucleic Acids Res       Date:  2001-11-15       Impact factor: 16.971

8.  Purification and characterization of two serine isoacceptor tRNAs from bovine mitochondria by using a hybridization assay method.

Authors:  T Yokogawa; Y Kumazawa; K Miura; K Watanabe
Journal:  Nucleic Acids Res       Date:  1989-04-11       Impact factor: 16.971

Review 9.  Thionucleosides in transfer ribonucleic acid: diversity, structure, biosynthesis, and function.

Authors:  P Ajitkumar; J D Cherayil
Journal:  Microbiol Rev       Date:  1988-03

10.  Optimization of the hybridization-based method for purification of thermostable tRNAs in the presence of tetraalkylammonium salts.

Authors:  Takashi Yokogawa; Yusuke Kitamura; Daigo Nakamura; Satoshi Ohno; Kazuya Nishikawa
Journal:  Nucleic Acids Res       Date:  2009-12-29       Impact factor: 16.971

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