Literature DB >> 6835840

Evidence for hydrated spermidine-calf thymus DNA toruses organized by circumferential DNA wrapping.

K A Marx, G C Ruben.   

Abstract

In spermidine-condensed calf thymus DNA preparations, torus-shaped condensates were shown by transmission electron microscopy to exist under the hydrated conditions of the freeze fracture experiment. Using extremely low Pt metal deposition levels (9 A Pt/C) high-contrast replicas of the spermidine-DNA toruses were obtained that showed circumferential wrapping of single DNA double helix-size surface fibres. Stereoscopic analysis of high magnification stereomicrographs established some details of the three-dimensional organization of two DNA double helix sections winding circumferentially on the inner surface of one such torus. These measurements demonstrate the usefulness of stereoscopic analysis of these high macromolecular organization magnification. Measurements on a number of torus-shaped complexes (n = 16) yielded these average dimensions: inner circumference (1840 +/- 204 A) outer circumference (2800 +/- 222 A), torus ring thickness (143 +/- 18 A). These data support a continuous circumferential DNA-winding model of torus organization proposed by Marx & Reynolds.

Entities:  

Mesh:

Substances:

Year:  1983        PMID: 6835840      PMCID: PMC325839          DOI: 10.1093/nar/11.6.1839

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  21 in total

1.  Compact form of DNA induced by spermidine.

Authors:  L C Gosule; J A Schellman
Journal:  Nature       Date:  1976-01-29       Impact factor: 49.962

2.  The compaction of DNA helices into either continuous supercoils or folded-fiber rods and toroids.

Authors:  T H Eickbush; E N Moudrianakis
Journal:  Cell       Date:  1978-02       Impact factor: 41.582

3.  Structure of histone H1-DNA complex: effect of histone H1 on DNA condensation.

Authors:  M W Hsiang; R D Cole
Journal:  Proc Natl Acad Sci U S A       Date:  1977-11       Impact factor: 11.205

4.  [Formation of the compact form of DNA in solution after reaction with spermidine].

Authors:  S G Skuridin; V A Kadykov; V S Shashkov; Iu M Evdokimov; Ia M Varshavskiĭ
Journal:  Mol Biol (Mosk)       Date:  1978 Mar-Apr

5.  Arrangement of herpesvirus deoxyribonucleic acid in the core.

Authors:  D Furlong; H Swift; B Roizman
Journal:  J Virol       Date:  1972-11       Impact factor: 5.103

6.  Mode of DNA packing within bacteriophage heads.

Authors:  K E Richards; R C Williams; R Calendar
Journal:  J Mol Biol       Date:  1973-08-05       Impact factor: 5.469

7.  5-(4-Aminobutylaminomethyl)uracil, an unusual pyrimidine from the deoxyribonucleic acid of bacteriophage phiW-14.

Authors:  A M Kropinski; R J Bose; R A Warren
Journal:  Biochemistry       Date:  1973-01-02       Impact factor: 3.162

8.  DNA condensation with polyamines I. Spectroscopic studies.

Authors:  L C Gosule; J A Schellman
Journal:  J Mol Biol       Date:  1978-05-25       Impact factor: 5.469

9.  DNA condensation with polyamines. II. Electron microscopic studies.

Authors:  D K Chattoraj; L C Gosule; A Schellman
Journal:  J Mol Biol       Date:  1978-05-25       Impact factor: 5.469

10.  Packing of DNA in the head of bacteriophage T2.

Authors:  S M Klimenko; T I Tikchonenko; V M Andreev
Journal:  J Mol Biol       Date:  1967-02-14       Impact factor: 5.469

View more
  15 in total

1.  Visualizing the formation and collapse of DNA toroids.

Authors:  Bram van den Broek; Maarten C Noom; Joost van Mameren; Christopher Battle; Fred C Mackintosh; Gijs J L Wuite
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

Review 2.  Packaged DNA. An elastic model.

Authors:  G S Manning
Journal:  Cell Biophys       Date:  1985-03

3.  The observation of the local ordering characteristics of spermidine-condensed DNA: atomic force microscopy and polarizing microscopy studies.

Authors:  Z Lin; C Wang; X Feng; M Liu; J Li; C Bai
Journal:  Nucleic Acids Res       Date:  1998-07-01       Impact factor: 16.971

4.  Topological defects and the optimum size of DNA condensates.

Authors:  S Y Park; D Harries; W M Gelbart
Journal:  Biophys J       Date:  1998-08       Impact factor: 4.033

5.  AFM analysis of DNA-protamine complexes bound to mica.

Authors:  M J Allen; E M Bradbury; R Balhorn
Journal:  Nucleic Acids Res       Date:  1997-06-01       Impact factor: 16.971

6.  DNA supercoiling by DNA gyrase. A static head analysis.

Authors:  H V Westerhoff; M H O'Dea; A Maxwell; M Gellert
Journal:  Cell Biophys       Date:  1988 Jan-Jun

7.  DNA packing in stable lipid complexes designed for gene transfer imitates DNA compaction in bacteriophage.

Authors:  M Schmutz; D Durand; A Debin; Y Palvadeau; A Etienne; A R Thierry
Journal:  Proc Natl Acad Sci U S A       Date:  1999-10-26       Impact factor: 11.205

8.  The iso-competition point for counterion competition binding to DNA: calculated multivalent versus monovalent cation binding equivalence.

Authors:  A Z Li; K A Marx
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

9.  Polymer- and salt-induced toroids of hexagonal DNA.

Authors:  J Ubbink; T Odijk
Journal:  Biophys J       Date:  1995-01       Impact factor: 4.033

10.  Binding of the transition metal ion [(H2O)(NH3)5Ru(II)]2+ to nucleosomal core and internucleosomal DNA.

Authors:  K A Marx; R Kruger; M J Clarke
Journal:  Mol Cell Biochem       Date:  1989-04-11       Impact factor: 3.396

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.