Literature DB >> 10388744

The iso-competition point for counterion competition binding to DNA: calculated multivalent versus monovalent cation binding equivalence.

A Z Li1, K A Marx.   

Abstract

In this paper we introduce an important parameter called the iso-competition point (ICP), to characterize the competition binding to DNA in a two-cation-species system. By imposing the condition of charge neutralization fraction equivalence theta1 = ZthetaZ upon the two simultaneous equations in Manning's counterion condensation theory, the ICPs can be calculated. Each ICP, which refers to a particular multivalent concentration where the charge fraction on DNA neutralized from monovalent cations equals that from the multivalent cations, corresponds to a specific ionic strength condition. At fixed ionic strength, the total DNA charge neutralization fractions thetaICP are equal, no matter whether the higher valence cation is divalent, trivalent, or tetravalent. The ionic strength effect on ICP can be expressed by a semiquantitative equation as ICPZa/ICPZb = (Ia/Ib)Z, where Ia, Ib refers to the instance of ionic strengths and Z indicates the valence. The ICP can be used to interpret and characterize the ionic strength, valence, and DNA length effects on the counterion competition binding in a two-species system. Data from our previous investigations involving binding of Mg2+, Ca2+, and Co(NH3)63+ to lambda-DNA-HindIII fragments ranging from 2.0 to 23.1 kbp was used to investigate the applicability of ICP to describe counterion binding. It will be shown that the ICP parameter presents a prospective picture of the counterion competition binding to polyelectrolyte DNA under a specific ion environment condition.

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Year:  1999        PMID: 10388744      PMCID: PMC1300316          DOI: 10.1016/S0006-3495(99)76876-1

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  19 in total

1.  The acceleration of linear DNA during pulsed-field gel electrophoresis.

Authors:  G Holzwarth; K J Platt; C B McKee; R W Whitcomb; G D Crater
Journal:  Biopolymers       Date:  1989-06       Impact factor: 2.505

2.  Limiting laws and counterion condensation in polyelectrolyte solutions. IV. The approach to the limit and the extraordinary stability of the charge fraction.

Authors:  G S Manning
Journal:  Biophys Chem       Date:  1977-09       Impact factor: 2.352

Review 3.  The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides.

Authors:  G S Manning
Journal:  Q Rev Biophys       Date:  1978-05       Impact factor: 5.318

4.  Counterion-induced condesation of deoxyribonucleic acid. a light-scattering study.

Authors:  R W Wilson; V A Bloomfield
Journal:  Biochemistry       Date:  1979-05-29       Impact factor: 3.162

5.  Spermidine-condensed phi X174 DNA cleavage by micrococcal nuclease: torus cleavage model and evidence for unidirectional circumferential DNA wrapping.

Authors:  K A Marx; T C Reynolds
Journal:  Proc Natl Acad Sci U S A       Date:  1982-11       Impact factor: 11.205

6.  Evidence for hydrated spermidine-calf thymus DNA toruses organized by circumferential DNA wrapping.

Authors:  K A Marx; G C Ruben
Journal:  Nucleic Acids Res       Date:  1983-03-25       Impact factor: 16.971

7.  Interactions of DNA with divalent metal ions. III. Extent of metal binding: experiment and theory.

Authors:  J Granot; D R Kearns
Journal:  Biopolymers       Date:  1982-01       Impact factor: 2.505

8.  Cation-induced toroidal condensation of DNA studies with Co3+(NH3)6.

Authors:  J Widom; R L Baldwin
Journal:  J Mol Biol       Date:  1980-12-25       Impact factor: 5.469

9.  Structure of viral phi 29 DNA condensed by simple triamines: a light-scattering and electron-microscopy study.

Authors:  S A Allison; J C Herr; J M Schurr
Journal:  Biopolymers       Date:  1981-03       Impact factor: 2.505

10.  A gel electrophoresis study of the competitive effects of monovalent counterion on the extent of divalent counterions binding to DNA.

Authors:  A Z Li; H Huang; X Re; L J Qi; K A Marx
Journal:  Biophys J       Date:  1998-02       Impact factor: 4.033

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