Literature DB >> 6784944

[Secondary and topographic structure of ribosomal RNA 16S of Escherichia coli].

P Stiegler, P Carbon, M Zuker, J P Ebel, C Ehresmann.   

Abstract

We present a model for the secondary structure of 16S ribosomal RNA from E. coli. This model has been deduced by restricting the total number of theoretical base pairings using the following criteria: (1) susceptibility of residues towards enzymatic probes that are specific for either paired or single stranded regions; (2) reactivity of certain residues to chemical modification; (3) evidence for medium and long range interactions; (4) comparative analysis of ribosomal RNA sequences from other organisms.

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Year:  1980        PMID： 6784944

Source DB:  PubMed          Journal:  C R Seances Acad Sci D        ISSN： 0567-655X


  9 in total

1.  Identifying constraints on the higher-order structure of RNA: continued development and application of comparative sequence analysis methods.

Authors:  R R Gutell; A Power; G Z Hertz; E J Putz; G D Stormo
Journal:  Nucleic Acids Res       Date:  1992-11-11       Impact factor: 16.971

2.  The 3'-terminal region of bacterial 23S ribosomal RNA: structure and homology with the 3'-terminal region of eukaryotic 28S rRNA and with chloroplast 4.5s rRNA.

Authors:  M A Machatt; J P Ebel; C Branlant
Journal:  Nucleic Acids Res       Date:  1981-04-10       Impact factor: 16.971

3.  Secondary structure comparisons between small subunit ribosomal RNA molecules from six different species.

Authors:  C Zwieb; C Glotz; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1981-08-11       Impact factor: 16.971

4.  Structural organization of the 16S ribosomal RNA from E. coli. Topography and secondary structure.

Authors:  P Stiegler; P Carbon; M Zuker; J P Ebel; C Ehresmann
Journal:  Nucleic Acids Res       Date:  1981-05-11       Impact factor: 16.971

5.  The sequence of the ribosomal 16S RNA from Proteus vulgaris. Sequence comparison with E. coli 16S RNA and its use in secondary model building.

Authors:  P Carbon; J P Ebel; C Ehresmann
Journal:  Nucleic Acids Res       Date:  1981-05-25       Impact factor: 16.971

6.  Correlation of RNA secondary structure statistics with thermodynamic stability and applications to folding.

Authors:  Johnny C Wu; David P Gardner; Stuart Ozer; Robin R Gutell; Pengyu Ren
Journal:  J Mol Biol       Date:  2009-06-18       Impact factor: 5.469

7.  Secondary structure of the large subunit ribosomal RNA from Escherichia coli, Zea mays chloroplast, and human and mouse mitochondrial ribosomes.

Authors:  C Glotz; C Zwieb; R Brimacombe; K Edwards; H Kössel
Journal:  Nucleic Acids Res       Date:  1981-07-24       Impact factor: 16.971

8.  The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs.

Authors:  Jamie J Cannone; Sankar Subramanian; Murray N Schnare; James R Collett; Lisa M D'Souza; Yushi Du; Brian Feng; Nan Lin; Lakshmi V Madabusi; Kirsten M Müller; Nupur Pande; Zhidi Shang; Nan Yu; Robin R Gutell
Journal:  BMC Bioinformatics       Date:  2002-01-17       Impact factor: 3.169

9.  Evolutionary rates vary among rRNA structural elements.

Authors:  S Smit; J Widmann; R Knight
Journal:  Nucleic Acids Res       Date:  2007-04-27       Impact factor: 16.971
  9 in total

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