Literature DB >> 6777116

Fine structure in the thermal denaturation of DNA: high temperature-resolution spectrophotometric studies.

A Wada, S Yabuki, Y Husimi.   

Abstract

Fine structures which appear in the optical melting profile of DNA are examined from both the experimental and theoretical aspects. After a brief historical survey of the DNA melting experiments during the pre-fine-structure era in Section II, the high temperature-resolution experimental techniques which are essential to the investigation of fine structure are described in Section III. Then, the current status of the high-resolution study is reviewed first by a phenomenological description of the melting profile (Section IV) and then of the refolding profile (Section V), where a general idea about the cooperatively melting region and several factors affecting it is given. Sections VI and VII are devoted to the review of current theoretical works. Several well-established theoretical frameworks which correlate the base sequence with the melting phenomena are examined in terms of their rigorousness and usefulness. The molecular thermodynamic parameters concerning the DNA melting which have been evaluated by several research groups are compared and discussed. Finally, in Section VIII, current ideas on the correlation between the fine structure and genetic functions and genetic maps are reviewed. Some future problems relating to the fine structure are also discussed.

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Year:  1980        PMID: 6777116     DOI: 10.3109/10409238009105432

Source DB:  PubMed          Journal:  CRC Crit Rev Biochem        ISSN: 0045-6411


  19 in total

1.  Mechanical separation of the complementary strands of DNA.

Authors:  B Essevaz-Roulet; U Bockelmann; F Heslot
Journal:  Proc Natl Acad Sci U S A       Date:  1997-10-28       Impact factor: 11.205

2.  DNA melting investigated by differential scanning calorimetry and Raman spectroscopy.

Authors:  J G Duguid; V A Bloomfield; J M Benevides; G J Thomas
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

3.  Energy-structure correlations of plasmid DNA in different topological forms.

Authors:  W Thumm; A Seidl; H J Hinz
Journal:  Nucleic Acids Res       Date:  1988-12-23       Impact factor: 16.971

4.  Statistical mechanics of DNA and protein suitable for computer calculation.

Authors:  N Saitô
Journal:  Cell Biophys       Date:  1987-12

5.  A thermal denaturation study of genomic DNAs from North American minnows (Cyprinidae: Teleostei).

Authors:  W J Karel; J R Gold
Journal:  Genetica       Date:  1987-10-30       Impact factor: 1.082

6.  Thermal denaturation of double-stranded nucleic acids: prediction of temperatures critical for gradient gel electrophoresis and polymerase chain reaction.

Authors:  G Steger
Journal:  Nucleic Acids Res       Date:  1994-07-25       Impact factor: 16.971

7.  A mechanochemical study of MgDNA fibers in ethanol-water solutions.

Authors:  J Schultz; A Rupprecht; Z Song; J Piskur; L Nordenskiöld; G Lahajnar
Journal:  Biophys J       Date:  1994-03       Impact factor: 4.033

8.  Application of polyelectrolyte theories for analysis of DNA melting in the presence of Na+ and Mg2+ ions.

Authors:  N Korolev; A P Lyubartsev; L Nordenskiöld
Journal:  Biophys J       Date:  1998-12       Impact factor: 4.033

9.  Determination of base and backbone contributions to the thermodynamics of premelting and melting transitions in B DNA.

Authors:  Liviu Movileanu; James M Benevides; George J Thomas
Journal:  Nucleic Acids Res       Date:  2002-09-01       Impact factor: 16.971

10.  A phenomenological model for predicting melting temperatures of DNA sequences.

Authors:  Garima Khandelwal; Jayaram Bhyravabhotla
Journal:  PLoS One       Date:  2010-08-26       Impact factor: 3.240

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