Literature DB >> 6759038

Use of isotope effects to elucidate enzyme mechanisms.

W W Cleland.   

Abstract

The chemical bond breaking steps are normally not rate limiting for enzymatic reactions. However, comparison of deuterium and tritium isotope effects on the same reaction, especially when coupled with 13C isotope effects for the same step measured with deuterated as well as unlabeled substrates, allows calculation of the intrinsic isotope effects on the bond breaking steps and thus a determination of the commitments to catalysis for the reactants. The variation in observed isotope effects as a function of reactant concentration can be used to determine kinetic mechanisms, while the pH variation of isotope effects can determine the stickiness of the reactants and which portions of the reactant mechanism are pH dependent. Finally the size of primary and secondary intrinsic isotope effects can be used to determine transition state structure.

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Year:  1982        PMID: 6759038     DOI: 10.3109/10409238209108715

Source DB:  PubMed          Journal:  CRC Crit Rev Biochem        ISSN: 0045-6411


  30 in total

1.  Uridine phosphorylase from Trypanosoma cruzi: kinetic and chemical mechanisms.

Authors:  Rafael G Silva; Vern L Schramm
Journal:  Biochemistry       Date:  2011-09-27       Impact factor: 3.162

2.  Entropic origin of cobalt-carbon bond cleavage catalysis in adenosylcobalamin-dependent ethanolamine ammonia-lyase.

Authors:  Miao Wang; Kurt Warncke
Journal:  J Am Chem Soc       Date:  2013-10-01       Impact factor: 15.419

Review 3.  Probing enzyme phosphoester interactions by combining mutagenesis and chemical modification of phosphate ester oxygens.

Authors:  James T Stivers; Rajesh Nagarajan
Journal:  Chem Rev       Date:  2006-08       Impact factor: 60.622

4.  Imino-oxy acetic acid dealkylation as evidence for an inner-sphere alcohol intermediate in the reaction catalyzed by peptidylglycine alpha-hydroxylating monooxygenase.

Authors:  Neil R McIntyre; Edward W Lowe; David J Merkler
Journal:  J Am Chem Soc       Date:  2009-07-29       Impact factor: 15.419

5.  Adenosylcobalamin-dependent methylmalonyl-CoA mutase from Propionibacterium shermanii. Active holoenzyme produced from Escherichia coli.

Authors:  N McKie; N H Keep; M L Patchett; P F Leadlay
Journal:  Biochem J       Date:  1990-07-15       Impact factor: 3.857

6.  Model for magnetic field effects on radical pair recombination in enzyme kinetics.

Authors:  C Eichwald; J Walleczek
Journal:  Biophys J       Date:  1996-08       Impact factor: 4.033

Review 7.  Enzymatic transition states, transition-state analogs, dynamics, thermodynamics, and lifetimes.

Authors:  Vern L Schramm
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

8.  EPR-kinetic isotope effect study of the mechanism of radical-mediated dehydrogenation of an alcohol by the radical SAM enzyme DesII.

Authors:  Mark W Ruszczycky; Sei-hyun Choi; Hung-wen Liu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-17       Impact factor: 11.205

Review 9.  Experimental analyses of the chemical dynamics of ribozyme catalysis.

Authors:  Michael E Harris; Adam G Cassano
Journal:  Curr Opin Chem Biol       Date:  2008-10-24       Impact factor: 8.822

10.  Kinetic isotope effects reveal early transition state of protein lysine methyltransferase SET8.

Authors:  Joshua A Linscott; Kanishk Kapilashrami; Zhen Wang; Chamara Senevirathne; Ian R Bothwell; Gil Blum; Minkui Luo
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-09       Impact factor: 11.205

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