Literature DB >> 6694901

Use of statistical criteria for screening potential homologies in nucleic acid sequences.

M Kanehisa.   

Abstract

We proposed a simple formula to assess the statistical significance of homologous segments found in comparison of two nucleic acid sequences (Goad and Kanehisa, Nucleic Acids Res. 10, 247-263, 1982). This paper clarifies the basic assumptions of the formula and its reliability is examined by Monte Carlo calculations. The results were satisfactory for random sequences. The formula is a useful measure for screening potentially interesting homologies and it can be implemented in any search algorithms. Examples are given for the screening procedure in the graphic display version of the Goad-Kanehisa algorithm.

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Year:  1984        PMID： 6694901      PMCID： PMC320997          DOI： 10.1093/nar/12.1part1.203

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  11 in total

1.  Computer analysis of nucleic acid regulatory sequences.

Authors:  L J Korn; C L Queen; M N Wegman
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205

2.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

3.  Los Alamos sequence analysis package for nucleic acids and proteins.

Authors:  M I Kanehisa
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

4.  A high speed, high capacity homology matrix: zooming through SV40 and polyoma.

Authors:  J Pustell; F C Kafatos
Journal:  Nucleic Acids Res       Date:  1982-08-11       Impact factor: 16.971

5.  Enhanced graphic matrix analysis of nucleic acid and protein sequences.

Authors:  J V Maizel; R P Lenk
Journal:  Proc Natl Acad Sci U S A       Date:  1981-12       Impact factor: 11.205

6.  SEQ: a nucleotide sequence analysis and recombination system.

Authors:  D L Brutlag; J Clayton; P Friedland; L H Kedes
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

7.  An interactive graphics program for comparing and aligning nucleic acid and amino acid sequences.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1982-05-11       Impact factor: 16.971

8.  Coding potential and regulatory signals of the polyoma virus genome.

Authors:  E Soeda; J R Arrand; N Smolar; J E Walsh; B E Griffin
Journal:  Nature       Date:  1980-01-31       Impact factor: 49.962

9.  Identification of common molecular subsequences.

Authors:  T F Smith; M S Waterman
Journal:  J Mol Biol       Date:  1981-03-25       Impact factor: 5.469

10.  Rapid similarity searches of nucleic acid and protein data banks.

Authors:  W J Wilbur; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1983-02       Impact factor: 11.205
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  38 in total

1.  Characterization of a Novel Protein Induced by Progressive or Rapid Drought and Salinity in Brassica napus Leaves.

Authors:  M P Reviron; N Vartanian; M Sallantin; J C Huet; J C Pernollet; D de Vienne
Journal:  Plant Physiol       Date:  1992-11       Impact factor: 8.340

2.  Nucleotide sequence and genetic analysis of a 13.1-kilobase-pair Pseudomonas denitrificans DNA fragment containing five cob genes and identification of structural genes encoding Cob(I)alamin adenosyltransferase, cobyric acid synthase, and bifunctional cobinamide kinase-cobinamide phosphate guanylyltransferase.

Authors:  J Crouzet; S Levy-Schil; B Cameron; L Cauchois; S Rigault; M C Rouyez; F Blanche; L Debussche; D Thibaut
Journal:  J Bacteriol       Date:  1991-10       Impact factor: 3.490

3.  Primary structure and ontogeny of an avian CD3 transcript.

Authors:  A Bernot; C Auffray
Journal:  Proc Natl Acad Sci U S A       Date:  1991-03-15       Impact factor: 11.205

4.  Genetic and sequence analyses of a Pseudomonas denitrificans DNA fragment containing two cob genes.

Authors:  B Cameron; C Guilhot; F Blanche; L Cauchois; M C Rouyez; S Rigault; S Levy-Schil; J Crouzet
Journal:  J Bacteriol       Date:  1991-10       Impact factor: 3.490

5.  Identification of a new calcitonin gene in the salmon Oncorhynchus gorbuscha.

Authors:  H Jansz; K Martial; J Zandberg; G Milhaud; A A Benson; A Julienne; M S Moukhtar; M Cressent
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-29       Impact factor: 11.205

6.  Two genes encode 7SL RNAs in the yeast Yarrowia lipolytica.

Authors:  F He; J M Beckerich; V Ribes; D Tollervey; C M Gaillardin
Journal:  Curr Genet       Date:  1989-12       Impact factor: 3.886

7.  Identification and sequence of gene dicB: translation of the division inhibitor from an in-phase internal start.

Authors:  K Cam; S Béjar; D Gil; J P Bouché
Journal:  Nucleic Acids Res       Date:  1988-07-25       Impact factor: 16.971

8.  Genetic and physical studies of a portion of the white locus participating in transcriptional regulation and in synapsis-dependent interactions in Drosophila adult tissues.

Authors:  D Davison; C H Chapman; C Wedeen; P M Bingham
Journal:  Genetics       Date:  1985-07       Impact factor: 4.562

9.  Similar organization of the nusA-infB operon in Bacillus subtilis and Escherichia coli.

Authors:  K Shazand; J Tucker; M Grunberg-Manago; J C Rabinowitz; T Leighton
Journal:  J Bacteriol       Date:  1993-05       Impact factor: 3.490

10.  A restriction fragment length polymorphism (RFLP) locus of rat (Rattus norvegicus) linked to the Cs-1 locus of rat linkage group XIII.

Authors:  M Takahashi; H Yokota; D Ayusawa; M Oishi; T Kunieda
Journal:  Biochem Genet       Date:  1992-10       Impact factor: 1.890
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