Literature DB >> 656060

Co-operativity and the methods of plotting binding and steady-state kinetic data.

E P Whitehead.   

Abstract

The features that distinguish positive from negative co-operativity in double-reciprocal Eadie-Hofstee-Scatchard and Hanes plots, often incorrectly stated to be the sign of curvature or second derivatives, are explained. It is shown how to determine the 'Hill exponent' and interaciton free energies from curves in these plots, and in the simple plot of ligand binding or velocity against free ligand or substrate concentration. New types of plots, where the kind of co-operative behaviour is more obvious than in the traditional ones, are proposed.

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Year:  1978        PMID: 656060      PMCID: PMC1183983          DOI: 10.1042/bj1710501

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  12 in total

Review 1.  LINKED FUNCTIONS AND RECIPROCAL EFFECTS IN HEMOGLOBIN: A SECOND LOOK.

Authors:  J WYMAN
Journal:  Adv Protein Chem       Date:  1964

2.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

3.  A new plot for allosteric phenomena.

Authors:  H Watari; Y Isogai
Journal:  Biochem Biophys Res Commun       Date:  1976-03-08       Impact factor: 3.575

4.  The relationship between co-operativity coefficients, factorability of the allosteric binding polynomial and curve shape.

Authors:  W G Bardsley
Journal:  J Mol Biol       Date:  1977-07-05       Impact factor: 5.469

5.  Factorability of the allosteric binding polynomial and graphical manifestations of cooperativity in third degree saturation functions.

Authors:  W G Bardsley
Journal:  J Theor Biol       Date:  1977-08-07       Impact factor: 2.691

6.  The allosteric regulation of hexokinase C from amphibian liver.

Authors:  T Ureta
Journal:  J Biol Chem       Date:  1976-08-25       Impact factor: 5.157

7.  Pyruvate kinase. Classes of regulatory isoenzymes in mammalian tissues.

Authors:  J Carbonell; J E Felíu; R Marco; A Sols
Journal:  Eur J Biochem       Date:  1973-08-01

8.  The mathematical formalism and the physical understanding of allosteric interactions in proteins.

Authors:  E P Whitehead
Journal:  Acta Biol Med Ger       Date:  1973

9.  The 3:3 function in enzyme kinetics possible shapes of v/S and (1/v)/(1/S) plots for third degree steady-state rate equations.

Authors:  W G Bardsley
Journal:  J Theor Biol       Date:  1977-03-21       Impact factor: 2.691

10.  Comparison of experimental binding data and theoretical models in proteins containing subunits.

Authors:  D E Koshland; G Némethy; D Filmer
Journal:  Biochemistry       Date:  1966-01       Impact factor: 3.162

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  6 in total

1.  A hierarchical approach to cooperativity in macromolecular and self-assembling binding systems.

Authors:  Josep Lluís Garcés; Luis Acerenza; Eduardo Mizraji; Francesc Mas
Journal:  J Biol Phys       Date:  2008-10-09       Impact factor: 1.365

2.  A computer program for enzyme kinetics that combines model discrimination, parameter refinement and sequential experimental design.

Authors:  R Franco; M T Gavaldà; E I Canela
Journal:  Biochem J       Date:  1986-09-15       Impact factor: 3.857

3.  Patterns of apparent co-operativity in a simple random non-equilibrium enzyme--substrate--modifier mechanism. Comparison with equilibrium allosteric models.

Authors:  E P Whitehead; M R Egmond
Journal:  Biochem J       Date:  1979-02-01       Impact factor: 3.857

4.  The exponential model for a regulatory enzyme. An interpretation of the linear free-energy relationship.

Authors:  S Ainsworth
Journal:  Biochem J       Date:  1986-12-15       Impact factor: 3.857

5.  Mucosal protection against sulphide: importance of the enzyme rhodanese.

Authors:  R Picton; M C Eggo; G A Merrill; M J S Langman; S Singh
Journal:  Gut       Date:  2002-02       Impact factor: 23.059

6.  Ligand depletion in vivo modulates the dynamic range and cooperativity of signal transduction.

Authors:  Stuart J Edelstein; Melanie I Stefan; Nicolas Le Novère
Journal:  PLoS One       Date:  2010-01-05       Impact factor: 3.240

  6 in total

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