Literature DB >> 6547530

31P-NMR analysis of the B to Z transition in double-stranded (dC-dG)3 and (dC-dG)4 in high salt solution.

T A Holak, P N Borer, G C Levy, J H van Boom, A H Wang.   

Abstract

In 4M NaCl solutions (dC-dG)n (n = 3,4; approximately 9 mM) exist as a mixture o +/- B and Z forms. The low and high field components of two 31P NMR resonances originating from internal phosphodiester groups are assigned to the GpC and CpG linkages, respectively. Low temperatures stabilize the Z-forms, which completely disappear above 50 degrees C (n = 3) and 65 degrees C (n = 4). delta H = -44 and -17 kJ/mol for B to Z transition in the hexamer and octamer duplexes, respectively. Temperature dependent changes (0-50 degrees C range) in the spin-lattice relaxation times at 145.7 MHz are distinctly different for the 31P nuclei o +/- GpC and CpG groups. The relaxation data can be explained by assuming that the GpC phosphodiester groups undergo more local internal motion than do the CpG groups.

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Year:  1984        PMID: 6547530      PMCID: PMC318863          DOI: 10.1093/nar/12.11.4625

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  27 in total

1.  31P Magnetic relaxation studies of yeast transfer RNAPhe.

Authors:  F Hayashi; K Akasaka; H Hatano
Journal:  Biopolymers       Date:  1977-03       Impact factor: 2.505

2.  Optimised parameters for A-DNA and B-DNA.

Authors:  S Arnott; D W Hukins
Journal:  Biochem Biophys Res Commun       Date:  1972-06-28       Impact factor: 3.575

Review 3.  Nucleotide conformational analysis by 31P nuclear magnetic resonance spectroscopy.

Authors:  D G Gorenstein
Journal:  Annu Rev Biophys Bioeng       Date:  1981

4.  "Alternating B-DNA" conformation for the oligo(dG-dC) duplex in high-salt solution.

Authors:  D J Patel; L L Canuel; F M Pohl
Journal:  Proc Natl Acad Sci U S A       Date:  1979-06       Impact factor: 11.205

5.  Helix-coil transition of the self-complementary dG-dG-dA-dA-dT-dT-dC-dC duplex.

Authors:  D J Patel; L L Canuel
Journal:  Eur J Biochem       Date:  1979-05-15

6.  Characterization of alternating deoxyribonucleic acid conformations in solution by phosphorus-31 nuclear magnetic resonance spectroscopy.

Authors:  J S Cohen; J B Wooten; C L Chatterjee
Journal:  Biochemistry       Date:  1981-05-26       Impact factor: 3.162

7.  Strange double helix of poly (dA-dT) in high-salt solution.

Authors:  J Kypr; M Vorlícková; M Budĕsinský; V Sklenár
Journal:  Biochem Biophys Res Commun       Date:  1981-04-30       Impact factor: 3.575

8.  Left-handed double helical DNA: variations in the backbone conformation.

Authors:  A J Wang; G J Quigley; F J Kolpak; G van der Marel; J H van Boom; A Rich
Journal:  Science       Date:  1981-01-09       Impact factor: 47.728

9.  Conformation of 145 base pair length poly (dG-dC) . poly (dG-dC) in solution and in association with histones.

Authors:  R T Simpson; H Shindo
Journal:  Nucleic Acids Res       Date:  1980-05-10       Impact factor: 16.971

10.  An alternating conformation characterizes the phosphodiester backbone of poly(dA-dT) in solution.

Authors:  H Shindo; R T Simpson; J S Cohen
Journal:  J Biol Chem       Date:  1979-09-10       Impact factor: 5.157

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  5 in total

1.  Thermodynamics of the B to Z transition in poly(m5dG-dC).

Authors:  J B Chaires; J M Sturtevant
Journal:  Proc Natl Acad Sci U S A       Date:  1986-08       Impact factor: 11.205

2.  Thermodynamic behaviour of the heptadecadeoxynucleotide d(CGCGCGTTTTTCGCGCG) forming B and Z hairpins in aqueous solution.

Authors:  L E Xodo; G Manzini; F Quadrifoglio; G A van der Marel; J H van Boom
Journal:  Nucleic Acids Res       Date:  1986-07-11       Impact factor: 16.971

3.  Enthalpy of the B-to-Z conformational transition of a DNA oligonucleotide determined by isothermal titration calorimetry.

Authors:  Jaime M Ferreira; Richard D Sheardy
Journal:  Biophys J       Date:  2006-08-18       Impact factor: 4.033

4.  Transcriptional enhancer related DNA sequences: anomalous 1H NMR NOE crosspeaks.

Authors:  M E Donlan; P Lu
Journal:  Nucleic Acids Res       Date:  1992-02-11       Impact factor: 16.971

5.  B- to Z-DNA transition probed by oligonucleotides containing methylphosphonates.

Authors:  L Callahan; F S Han; W Watt; D Duchamp; F J Kézdy; K Agarwal
Journal:  Proc Natl Acad Sci U S A       Date:  1986-03       Impact factor: 11.205

  5 in total

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