Literature DB >> 7444458

Left-handed double helical DNA: variations in the backbone conformation.

A J Wang, G J Quigley, F J Kolpak, G van der Marel, J H van Boom, A Rich.   

Abstract

Four different crystals of d(CpGpCpGpCpG) have been solved by x-ray diffraction analysis and all form similar left-handed double helical Z-DNA molecules in the crystal lattice. Two different conformations are observed for the phosphates in the GpC sequences, as the phosphates are found either facing the helical groove or rotated away from it. The latter conformation is often found when hydrated magnesium ions are complexed to a phosphate oxygen atom. These different conformations may be used when right-handed B-DNA joins left-handed Z-DNA. Atomic coordinates and torsion angles are presented for both types of Z-DNA.

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Year:  1981        PMID: 7444458     DOI: 10.1126/science.7444458

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  121 in total

1.  Intrinsic conformational energetics associated with the glycosyl torsion in DNA: a quantum mechanical study.

Authors:  Nicolas Foloppe; Brigitte Hartmann; Lennart Nilsson; Alexander D MacKerell
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

Review 2.  Unusual DNA duplex and hairpin motifs.

Authors:  Shan-Ho Chou; Ko-Hsin Chin; Andrew H-J Wang
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

3.  Evidence for a new Z-type left-handed DNA helix: properties of Z(WC)-DNA.

Authors:  A T Ansevin; A H Wang
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

4.  Bent helical structure in kinetoplast DNA.

Authors:  J C Marini; S D Levene; D M Crothers; P T Englund
Journal:  Proc Natl Acad Sci U S A       Date:  1982-12       Impact factor: 11.205

5.  The transition between the B and Z conformations of DNA investigated by targeted molecular dynamics simulations with explicit solvation.

Authors:  Mika A Kastenholz; Thomas U Schwartz; Philippe H Hünenberger
Journal:  Biophys J       Date:  2006-10-15       Impact factor: 4.033

6.  Computation of ionic distributions around charged biomolecular structures: results for right-handed and left-handed DNA.

Authors:  R Klement; D M Soumpasis; T M Jovin
Journal:  Proc Natl Acad Sci U S A       Date:  1991-06-01       Impact factor: 11.205

7.  Junction between Z and B conformations in a DNA restriction fragment: evaluation by Raman spectroscopy.

Authors:  R M Wartell; J Klysik; W Hillen; R D Wells
Journal:  Proc Natl Acad Sci U S A       Date:  1982-04       Impact factor: 11.205

8.  Normal coordinate analysis of 5'-dGMP and its deuterated derivatives. A calculated approach to designate the guanine-residue vibration modes in B and Z forms of DNA.

Authors:  M Ghomi; E Taillandier
Journal:  Eur Biophys J       Date:  1985       Impact factor: 1.733

9.  Ethidium bromide changes the nuclease-sensitive DNA binding sites of the antitumor drug cis-diamminedichloroplatinum(II).

Authors:  T D Tullius; S J Lippard
Journal:  Proc Natl Acad Sci U S A       Date:  1982-06       Impact factor: 11.205

10.  Right-handed and left-handed DNA: studies of B- and Z-DNA by using proton nuclear Overhauser effect and P NMR.

Authors:  D J Patel; S A Kozlowski; A Nordheim; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1982-03       Impact factor: 11.205

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