Literature DB >> 6487577

Thermodynamic linkages in rabbit muscle pyruvate kinase: analysis of experimental data by a two-state model.

R W Oberfelder, B G Barisas, J C Lee.   

Abstract

A concerted, allosteric model is developed, and equations are derived for quantitative interpretation of the kinetic and equilibrium binding data of rabbit muscle pyruvate kinase at pH 7.5 and 23 degrees C. The simplest model which seems likely to rationalize the experimental data involves two conformational states. In this model, two simplifying assumptions are made. First, the affinities of pyruvate kinase for both substrate and inhibitor are assumed to depend only upon the conformational state of the tetrameric enzyme. Second, the rate of product formation is also assumed to depend only upon the enzyme conformation. All types of experimental data are analyzed simultaneously to estimate the parameters which best predict the total body of experimental results. The fitted parameters indicate that the intrinsic allosteric equilibrium favors the active (R) state by 11 to 1. The substrate phosphoenolpyruvate binds preferentially, by a factor of 10, to the R state, whereas the inhibitor Phe has about 23 times higher affinity for the inactive (T) state. In all cases tested, the calculated values are in good agreement with the experimental data.

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Year:  1984        PMID: 6487577     DOI: 10.1021/bi00312a005

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  7 in total

1.  Effects of heterogeneity and cooperativity on the forms of binding curves for multivalent ligands.

Authors:  S J Harris; C M Jackson; D J Winzor
Journal:  J Protein Chem       Date:  1995-08

2.  Identification of regions of rabbit muscle pyruvate kinase important for allosteric regulation by phenylalanine, detected by H/D exchange mass spectrometry.

Authors:  Charulata B Prasannan; Maria T Villar; Antonio Artigues; Aron W Fenton
Journal:  Biochemistry       Date:  2013-03-06       Impact factor: 3.162

3.  Exploring the limits of the usefulness of mutagenesis in studies of allosteric mechanisms.

Authors:  Qingling Tang; Aileen Y Alontaga; Todd Holyoak; Aron W Fenton
Journal:  Hum Mutat       Date:  2017-05-23       Impact factor: 4.878

4.  Changes in small-angle X-ray scattering parameters observed upon binding of ligand to rabbit muscle pyruvate kinase are not correlated with allosteric transitions.

Authors:  Aron W Fenton; Rachel Williams; Jill Trewhella
Journal:  Biochemistry       Date:  2010-08-24       Impact factor: 3.162

5.  Functional energetic landscape in the allosteric regulation of muscle pyruvate kinase. 1. Calorimetric study.

Authors:  Petr Herman; J Ching Lee
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

6.  Functional energetic landscape in the allosteric regulation of muscle pyruvate kinase. 2. Fluorescence study.

Authors:  Petr Herman; J Ching Lee
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

Review 7.  Modulation of allostery of pyruvate kinase by shifting of an ensemble of microstates.

Authors:  J Ching Lee
Journal:  Acta Biochim Biophys Sin (Shanghai)       Date:  2008-07       Impact factor: 3.848

  7 in total

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