Literature DB >> 19719323

Functional energetic landscape in the allosteric regulation of muscle pyruvate kinase. 2. Fluorescence study.

Petr Herman1, J Ching Lee.   

Abstract

The energetic landscape of the allosteric regulatory mechanism of rabbit muscle pyruvate kinase (RMPK) was characterized by isothermal titration calorimetry (ITC). Four novel insights were uncovered. (1) ADP exhibits a dual property. Depending on the temperature, ADP can regulate RMPK activity by switching the enzyme to either the R or T state. (2) The assumption that ligand binding to RMPK is state-dependent is only correct for PEP but not Phe and ADP. (3) The effect of pH on the regulatory behavior of RMPK is partly due to the complex pattern of proton release or absorption linked to the multiple linked equilibria which govern the activity of the enzyme. (4) The R <--> T equilibrium is accompanied by a significant DeltaC(p), rendering RMPK most sensitive to temperature under physiological conditions. To rigorously test the validity of conclusions derived from the ITC data, in this study a fluorescence approach, albeit indirect, that tracks continuous structural perturbations was employed. Intrinsic Trp fluorescence of RMPK in the absence and presence of substrates phosphoenolpyruvate (PEP) and ADP, and the allosteric inhibitor Phe, was measured in the temperature range between 4 and 45 degrees C. For data analysis, the fluorescence data were complemented by ITC experiments to yield an extended data set allowing more complete characterization of the RMPK regulatory mechanism. Twenty-one thermodynamic parameters were derived to define the network of linked interactions involved in regulating the allosteric behavior of RMPK through global analysis of the ITC and fluorescent data sets. In this study, 27 independent curves with more than 1600 experimental points were globally analyzed. Consequently, the consensus results substantiate not only the conclusions derived from the ITC data but also structural information characterizing the transition between the active and inactive states of RMPK and the antagonism between ADP and Phe binding. The latter observation reveals a novel role for ADP in the allosteric regulation of RMPK.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19719323      PMCID: PMC2772997          DOI: 10.1021/bi900280u

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  31 in total

1.  Global analysis of fluorescence lifetime imaging microscopy data.

Authors:  P J Verveer; A Squire; P I Bastiaens
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

2.  ON THE NATURE OF ALLOSTERIC TRANSITIONS: A PLAUSIBLE MODEL.

Authors:  J MONOD; J WYMAN; J P CHANGEUX
Journal:  J Mol Biol       Date:  1965-05       Impact factor: 5.469

3.  Some factors in the interpretation of protein denaturation.

Authors:  W KAUZMANN
Journal:  Adv Protein Chem       Date:  1959

4.  Cold adapted animals. II. Changes in the circulating plasma proteins and formed elements of rabbit blood under various degrees of cold stress.

Authors:  G B SUTHERLAND; I L TRAPANI; D H CAMPBELL
Journal:  J Appl Physiol       Date:  1958-05       Impact factor: 3.531

5.  Global analysis of non-specific protein-nucleic interactions by sedimentation equilibrium.

Authors:  Jason W Ucci; James L Cole
Journal:  Biophys Chem       Date:  2004-03-01       Impact factor: 2.352

6.  Energetics of allosteric regulation in muscle pyruvate kinase.

Authors:  T G Consler; M J Jennewein; G Z Cai; J C Lee
Journal:  Biochemistry       Date:  1992-09-01       Impact factor: 3.162

7.  Effects of temperature on protein structure and dynamics: X-ray crystallographic studies of the protein ribonuclease-A at nine different temperatures from 98 to 320 K.

Authors:  R F Tilton; J C Dewan; G A Petsko
Journal:  Biochemistry       Date:  1992-03-10       Impact factor: 3.162

8.  Structural and functional linkages between subunit interfaces in mammalian pyruvate kinase.

Authors:  J O Wooll; R H Friesen; M A White; S J Watowich; R O Fox; J C Lee; E W Czerwinski
Journal:  J Mol Biol       Date:  2001-09-21       Impact factor: 5.469

9.  14-3-3zeta C-terminal stretch changes its conformation upon ligand binding and phosphorylation at Thr232.

Authors:  Veronika Obsilova; Petr Herman; Jaroslav Vecer; Miroslav Sulc; Jan Teisinger; Tomas Obsil
Journal:  J Biol Chem       Date:  2003-11-12       Impact factor: 5.157

10.  Effects of metabolites on the structural dynamics of rabbit muscle pyruvate kinase.

Authors:  Shaoning Yu; Lucy L-Y Lee; J Ching Lee
Journal:  Biophys Chem       Date:  2003-01-08       Impact factor: 2.352

View more
  7 in total

1.  Integration and global analysis of isothermal titration calorimetry data for studying macromolecular interactions.

Authors:  Chad A Brautigam; Huaying Zhao; Carolyn Vargas; Sandro Keller; Peter Schuck
Journal:  Nat Protoc       Date:  2016-04-07       Impact factor: 13.491

2.  Global multi-method analysis of affinities and cooperativity in complex systems of macromolecular interactions.

Authors:  Huaying Zhao; Peter Schuck
Journal:  Anal Chem       Date:  2012-10-16       Impact factor: 6.986

3.  H/D Exchange Characterization of Silent Coupling: Entropy-Enthalpy Compensation in Allostery.

Authors:  Charulata B Prasannan; Aleksandra Gmyrek; Tyler A Martin; Maria T Villar; Antonio Artigues; James Ching Lee; Aron W Fenton
Journal:  Biophys J       Date:  2020-05-20       Impact factor: 4.033

Review 4.  SEDPHAT--a platform for global ITC analysis and global multi-method analysis of molecular interactions.

Authors:  Huaying Zhao; Grzegorz Piszczek; Peter Schuck
Journal:  Methods       Date:  2014-12-02       Impact factor: 3.608

5.  Functional energetic landscape in the allosteric regulation of muscle pyruvate kinase. 1. Calorimetric study.

Authors:  Petr Herman; J Ching Lee
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

6.  Functional energetic landscape in the allosteric regulation of muscle pyruvate kinase. 3. Mechanism.

Authors:  Petr Herman; J Ching Lee
Journal:  Biochemistry       Date:  2009-10-13       Impact factor: 3.162

7.  In vivo kinetics of U4/U6·U5 tri-snRNP formation in Cajal bodies.

Authors:  Ivan Novotný; Michaela Blažíková; David Staněk; Petr Herman; Jan Malinsky
Journal:  Mol Biol Cell       Date:  2010-12-22       Impact factor: 4.138

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.