Literature DB >> 6379466

Novel stereospecificity of the L-arabinose-binding protein.

F A Quiocho, N K Vyas.   

Abstract

Tertiary structure refinement at 1.7 A resolution of the liganded form of L-arabinose-binding protein from Escherichia coli has revealed a novel binding site geometry which accommodates both alpha- and beta-anomers of L-arabinose. This detailed structure analysis provides new understanding of protein-sugar interaction, the process by which the binding protein minimizes the difference in the stability of the two bound sugar anomers, and the roles of periplasmic binding proteins in active transport.

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Year:  1984        PMID: 6379466     DOI: 10.1038/310381a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  35 in total

1.  Plasticity of quaternary structure: twenty-two ways to form a LacI dimer.

Authors:  L Swint-Kruse; C R Elam; J W Lin; D R Wycuff; K Shive Matthews
Journal:  Protein Sci       Date:  2001-02       Impact factor: 6.725

2.  Construction of a fluorescent biosensor family.

Authors:  Robert M de Lorimier; J Jeff Smith; Mary A Dwyer; Loren L Looger; Kevin M Sali; Chad D Paavola; Shahir S Rizk; Shamil Sadigov; David W Conrad; Leslie Loew; Homme W Hellinga
Journal:  Protein Sci       Date:  2002-11       Impact factor: 6.725

3.  Evaluation of the relative stability of liganded versus ligand-free protein conformations using Simplicial Neighborhood Analysis of Protein Packing (SNAPP) method.

Authors:  Douglas B Sherman; Shuxing Zhang; J Bruce Pitner; Alexander Tropsha
Journal:  Proteins       Date:  2004-09-01

Review 4.  Weakly hydrated surfaces and the binding interactions of small biological solutes.

Authors:  John W Brady; Letizia Tavagnacco; Laurent Ehrlich; Mo Chen; Udo Schnupf; Michael E Himmel; Marie-Louise Saboungi; Attilio Cesàro
Journal:  Eur Biophys J       Date:  2011-11-29       Impact factor: 1.733

5.  Importance of accurate charges in molecular docking: quantum mechanical/molecular mechanical (QM/MM) approach.

Authors:  Art E Cho; Victor Guallar; Bruce J Berne; Richard Friesner
Journal:  J Comput Chem       Date:  2005-07-15       Impact factor: 3.376

6.  Functional mapping of the surface of Escherichia coli ribose-binding protein: mutations that affect chemotaxis and transport.

Authors:  R A Binnie; H Zhang; S Mowbray; M A Hermodson
Journal:  Protein Sci       Date:  1992-12       Impact factor: 6.725

7.  Self-consistently optimized statistical mechanical energy functions for sequence structure alignment.

Authors:  K K Koretke; Z Luthey-Schulten; P G Wolynes
Journal:  Protein Sci       Date:  1996-06       Impact factor: 6.725

8.  DNA sequence analysis of artificially evolved ebg enzyme and ebg repressor genes.

Authors:  B G Hall; P W Betts; J C Wootton
Journal:  Genetics       Date:  1989-12       Impact factor: 4.562

9.  Protein structural similarities predicted by a sequence-structure compatibility method.

Authors:  Y Matsuo; K Nishikawa
Journal:  Protein Sci       Date:  1994-11       Impact factor: 6.725

10.  Ligand-induced conformational changes in a thermophilic ribose-binding protein.

Authors:  Matthew J Cuneo; Lorena S Beese; Homme W Hellinga
Journal:  BMC Struct Biol       Date:  2008-11-19
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