Literature DB >> 6365162

Nuclear magnetic resonance studies of amino acids and proteins. Deuterium nuclear magnetic resonance relaxation of deuteriomethyl-labeled amino acids in crystals and in Halobacterium halobium and Escherichia coli cell membranes.

M A Keniry, A Kintanar, R L Smith, H S Gutowsky, E Oldfield.   

Abstract

We have obtained deuterium (2H) Fourier transform nuclear magnetic resonance (NMR) spectra of zwitterionic L-[beta-2H3]alanine, DL-[gamma-2H6]valine, DL-[beta, gamma-2H4]threonine, L-[delta-2H3]leucine, and L-[alpha, beta, gamma, gamma', delta-2H10]isoleucine in the crystalline solid state and have determined the deuteriomethyl group spin-lattice relaxation rates as a function of temperature. The results yield the Arrhenius activation energies (delta E) for methyl rotation, and through use of a suitable mathematical model, rotational correlation times, tau c. For alanine, valine, threonine, leucine, and isoleucine at 37 degrees C, tau c and delta E values are 780, 100, 40, 38, and 18 ps and 22, 14.0, 17.6, 15.5, and 8.6 kJ, respectively. For L-[beta-2H3]alanine in the zwitterionic lattice, a spin-lattice relaxation time (T1) minimum of 2.1 +/- 0.3 ms is observed (at 0 degree C), in excellent agreement with the 1.92-ms prediction of the mathematical model. Similar tau c and delta E measurements are reported for bacteriorhodopsin in the purple membrane of Halobacterium halobium R1 and for Escherichia coli cell membranes. Overall, our results demonstrate a great similarity between the dynamics in amino acid crystals and in membrane proteins. However, threonine exhibits a nonlinear Arrhenius behavior in bacteriorhodopsin, and in the valine-, leucine-, and isoleucine-labeled membrane samples at higher temperatures (approximately greater than 37 degrees C), there is evidence of an additional slow side-chain motion. The lipid phase state in E. coli does not appear to influence, on the average, the dynamics of the valine side chains. These results indicate that the sensitivity of the deuterium NMR technique is now adequate to study in moderate detail the dynamics of most types of amino acids in a membrane protein and that adequate sensitivity, in some instances, should be available for the study of individual amino acids in suitably labeled membrane proteins.

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Year:  1984        PMID: 6365162     DOI: 10.1021/bi00297a018

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  14 in total

1.  Influence of hydration on the dynamics of lysozyme.

Authors:  J H Roh; J E Curtis; S Azzam; V N Novikov; I Peral; Z Chowdhuri; R B Gregory; A P Sokolov
Journal:  Biophys J       Date:  2006-07-14       Impact factor: 4.033

Review 2.  Magnetic resonance of membranes.

Authors:  P F Knowles; D Marsh
Journal:  Biochem J       Date:  1991-03-15       Impact factor: 3.857

Review 3.  Basic experiments in 2H static NMR for the characterization of protein side-chain dynamics.

Authors:  Liliya Vugmeyster; Dmitry Ostrovsky
Journal:  Methods       Date:  2018-04-27       Impact factor: 3.608

4.  Contrasting molecular dynamics in red and purple membrane fractions of the Halobacterium halobium.

Authors:  J Herzfeld; C M Mulliken; D J Siminovitch; R G Griffin
Journal:  Biophys J       Date:  1987-11       Impact factor: 4.033

5.  Dynamics and orientation of N+(CD3)3-bromoacetylcholine bound to its binding site on the nicotinic acetylcholine receptor.

Authors:  P T Williamson; J A Watts; G H Addona; K W Miller; A Watts
Journal:  Proc Natl Acad Sci U S A       Date:  2001-02-20       Impact factor: 11.205

6.  2H NMR determination of the global correlation time of the gramicidin channel in a lipid bilayer.

Authors:  K C Lee; W Hu; T A Cross
Journal:  Biophys J       Date:  1993-09       Impact factor: 4.033

7.  Solid-state 19F-NMR analysis of 19F-labeled tryptophan in gramicidin A in oriented membranes.

Authors:  Stephan L Grage; Junfeng Wang; Timothy A Cross; Anne S Ulrich
Journal:  Biophys J       Date:  2002-12       Impact factor: 4.033

8.  Side chain and backbone dynamics of phospholamban in phospholipid bilayers utilizing 2H and 15N solid-state NMR spectroscopy.

Authors:  Shadi Abu-Baker; Jun-Xia Lu; Shidong Chu; Clarke C Brinn; Christopher A Makaroff; Gary A Lorigan
Journal:  Biochemistry       Date:  2007-10-02       Impact factor: 3.162

9.  (1)H-(13)C Hetero-nuclear dipole-dipole couplings of methyl groups in stationary and magic angle spinning solid-state NMR experiments of peptides and proteins.

Authors:  Chin H Wu; Bibhuti B Das; Stanley J Opella
Journal:  J Magn Reson       Date:  2009-10-21       Impact factor: 2.229

10.  Role of side-chain conformational entropy in transmembrane helix dimerization of glycophorin A.

Authors:  Wei Liu; Evan Crocker; David J Siminovitch; Steven O Smith
Journal:  Biophys J       Date:  2003-02       Impact factor: 4.033

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