Literature DB >> 6356037

Nucleotides in 16S rRNA that are required in unmodified form for features recognized by ribosomal protein S8.

D L Thurlow, C Ehresmann, B Ehresmann.   

Abstract

Nucleotides in 16S rRNA which are required in unmodified form for specific recognition of ribosomal protein S8 from Escherichia coli were identified using a damage-selection experimental approach. Prior to complex formation with S8, 16S rRNA was treated under fully denaturing conditions with either diethyl pyrocarbonate or 25% hydrazine. Following separation of bound from unbound fragments of RNA, those associated with S8 were analyzed for their content of modified bases by treatment with aniline. Nucleotides found to be consistently unmodified in such fragments were located near the base of a stable helix (encompassing bases 581-656) or near the apex of the helix on the 3' proximal side. A minor S8 ribonucleoprotein particle was found to contain fragments which extended in the 3' direction to position 671.

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Year:  1983        PMID： 6356037      PMCID： PMC326414          DOI： 10.1093/nar/11.19.6787

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  12 in total

1.  An investigation of the 16-S RNA binding sites of ribosomal proteins S4, S8, S15, and S20 FROM Escherichia coli.

Authors:  E Ungewickell; R Garrett; C Ehresmann; P Stiegler; P Fellner
Journal:  Eur J Biochem       Date:  1975-02-03

2.  Location and characteristics of ribosomal protein binding sites in the 16S RNA of Escherichia coli.

Authors:  R A Zimmermann; G A Mackie; A Muto; R A Garrett; E Ungewickell; C Ehresmann; P Stiegler; J P Ebel; P Fellner
Journal:  Nucleic Acids Res       Date:  1975-02       Impact factor: 16.971

3.  The structure of the RNA binding site of ribosomal proteins S8 and S15.

Authors:  R Müller; R A Garrett; H F Noller
Journal:  J Biol Chem       Date:  1979-05-25       Impact factor: 5.157

4.  Binding sites for ribosomal proteins S8 and S15 in the 16 S RNA of Escherichia coli.

Authors:  R A Zimmermann; K Singh-Bergmann
Journal:  Biochim Biophys Acta       Date:  1979-07-26

5.  Direct chemical method for sequencing RNA.

Authors:  D A Peattie
Journal:  Proc Natl Acad Sci U S A       Date:  1979-04       Impact factor: 11.205

6.  Localization of a binding site for ribosomal protein S8 within the 16S ribosomal ribonucleic acid of Escherichia coli.

Authors:  H W Schaup; M L Sogin; C G Kurland; C R Woese
Journal:  J Bacteriol       Date:  1973-07       Impact factor: 3.490

7.  UV shadowing--a new and convenient method for the location of ultraviolet-absorbing species in polyacrylamide gels.

Authors:  S M Hassur; H W Whitlock
Journal:  Anal Biochem       Date:  1974-05       Impact factor: 3.365

8.  Translational regulation by ribosomal protein S8 in Escherichia coli: structural homology between rRNA binding site and feedback target on mRNA.

Authors:  P O Olins; M Nomura
Journal:  Nucleic Acids Res       Date:  1981-04-10       Impact factor: 16.971

9.  Enzymatic oligoribonucleotide synthesis with T4 RNA ligase.

Authors:  T E England; O C Uhlenbeck
Journal:  Biochemistry       Date:  1978-05-30       Impact factor: 3.162

10.  The localization of multiple sites on 16S RNA which are cross-linked to proteins S7 and S8 in Escherichia coli 30S ribosomal subunits by treatment with 2-iminothiolane.

Authors:  I Wower; R Brimacombe
Journal:  Nucleic Acids Res       Date:  1983-03-11       Impact factor: 16.971
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  11 in total

1.  The location of protein S8 and surrounding elements of 16S rRNA in the 70S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography.

Authors:  L Lancaster; G M Culver; G Z Yusupova; J H Cate; M M Yusupov; H F Noller
Journal:  RNA       Date:  2000-05       Impact factor: 4.942

2.  The structure of Aquifex aeolicus ribosomal protein S8 reveals a unique subdomain that contributes to an extremely tight association with 16S rRNA.

Authors:  Elena Menichelli; Stephen P Edgcomb; Michael I Recht; James R Williamson
Journal:  J Mol Biol       Date:  2011-11-04       Impact factor: 5.469

3.  Mutagenesis of ribosomal protein S8 from Escherichia coli: defects in regulation of the spc operon.

Authors:  I Wower; M P Kowaleski; L E Sears; R A Zimmermann
Journal:  J Bacteriol       Date:  1992-02       Impact factor: 3.490

4.  A chemical interference study on the interaction of ribosomal protein L11 from Escherichia coli with RNA molecules containing its binding site from 23S rRNA.

Authors:  D Karaoglu; D L Thurlow
Journal:  Nucleic Acids Res       Date:  1991-10-11       Impact factor: 16.971

5.  The binding site for ribosomal protein S8 in 16S rRNA and spc mRNA from Escherichia coli: minimum structural requirements and the effects of single bulged bases on S8-RNA interaction.

Authors:  H Wu; L Jiang; R A Zimmermann
Journal:  Nucleic Acids Res       Date:  1994-05-11       Impact factor: 16.971

6.  Structural features of the binding site for ribosomal protein S8 in Escherichia coli 16S rRNA defined using NMR spectroscopy.

Authors:  K Kalurachchi; K Uma; R A Zimmermann; E P Nikonowicz
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-18       Impact factor: 11.205

7.  Residual tRNA secondary structure in 'denaturing' 8M urea/TBE polyacrylamide gels: effects on electrophoretic mobility and dependency on prior chemical modification of the tRNA.

Authors:  L A Hegg; D L Thurlow
Journal:  Nucleic Acids Res       Date:  1990-05-25       Impact factor: 16.971

8.  An RNA mutation that increases the affinity of an RNA-protein interaction.

Authors:  P T Lowary; O C Uhlenbeck
Journal:  Nucleic Acids Res       Date:  1987-12-23       Impact factor: 16.971

Review 9.  Structure and function of ribosomal RNA.

Authors:  R Brimacombe; W Stiege
Journal:  Biochem J       Date:  1985-07-01       Impact factor: 3.857

10.  Translational regulation of the L11 ribosomal protein operon of Escherichia coli: analysis of the mRNA target site using oligonucleotide-directed mutagenesis.

Authors:  G Baughman; M Nomura
Journal:  Proc Natl Acad Sci U S A       Date:  1984-09       Impact factor: 11.205
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