Literature DB >> 1091919

Location and characteristics of ribosomal protein binding sites in the 16S RNA of Escherichia coli.

R A Zimmermann, G A Mackie, A Muto, R A Garrett, E Ungewickell, C Ehresmann, P Stiegler, J P Ebel, P Fellner.   

Abstract

Specific binding sites for five proteins of the Escherichia coli 30S ribosomal subunit have been located within the 16S RNA. The sites are structurally diverse and range in size from 40 to 500 nucleotides; their functional integrity appears to depend upon both the secondary structure and conformation of the RNA molecule. Evidence is presented which indicates that additional proteins interact with the RNA at later stages of subunit assembly.

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Year:  1975        PMID： 1091919      PMCID： PMC342832          DOI： 10.1093/nar/2.2.279

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  21 in total

1.  Fluorescence studies on the 30 S ribosome assembly process.

Authors:  A Bollen; A Herzog; A Favre; J Thibault; F Gros
Journal:  FEBS Lett       Date:  1970-11-09       Impact factor: 4.124

2.  RNA-protein interactions in the ribosome. II. Binding of ribosomal proteins to isolated fragments of the 16 S RNA.

Authors:  R A Zimmermann; A Muto; G A Mackie
Journal:  J Mol Biol       Date:  1974-06-25       Impact factor: 5.469

3.  Protein-ribonucleic acid interactions in Escherichia coli ribosomes. Solution studies on S4-16S ribonucleic acid and L24-23S ribonucleic acid binding.

Authors:  C Schulte; C A Morrison; R A Garrett
Journal:  Biochemistry       Date:  1974-02-26       Impact factor: 3.162

4.  Assembly mapping of 30 S ribosomal proteins from Escherichia coli. Further studies.

Authors:  W A Held; B Ballou; S Mizushima; M Nomura
Journal:  J Biol Chem       Date:  1974-05-25       Impact factor: 5.157

5.  The determination of the primary structure of the 16S ribosomal RNA of Escherichia coli. 2. Nucleotide sequences of products from partial enzymatic hydrolysis.

Authors:  C Ehresmann; P Stiegler; P Fellner; J P Ebel
Journal:  Biochimie       Date:  1972       Impact factor: 4.079

6.  The identification of the RNA binding site for a 50 S ribosomal protein by a new technique.

Authors:  C Branlant; A Krol; J Sriwidada; P Fellner; R Crichton
Journal:  FEBS Lett       Date:  1973-09-15       Impact factor: 4.124

7.  Ribosomal proteins. XXIX. Specific protein binding sites on 16S rRNA of Escherichia coli.

Authors:  R A Garrett; K H Rak; L Daya; G Stöffler
Journal:  Mol Gen Genet       Date:  1972

8.  Nucleotide sequences from the low molecular weight ribosomal RNA of Escherichia coli.

Authors:  G G Brownlee; F Sanger
Journal:  J Mol Biol       Date:  1967-02-14       Impact factor: 5.469

9.  Molecular interactions of ribosomal components. I. Identification of RNA binding sites for individual 30S ribosomal proteins.

Authors:  H W Schaup; M Green; C G Kurland
Journal:  Mol Gen Genet       Date:  1970

10.  Molecular interactions of ribosomal components. II. Site-specific complex formation between 30S proteins and ribosomal RNA.

Authors:  H W Schaup; M Green; C G Kurland
Journal:  Mol Gen Genet       Date:  1971
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  36 in total

1.  Evidence for tertiary structural RNA-RNA interactions within the protein S4 binding site at the 5'-end of 16S ribosomal RNA of Escherichia coli.+.

Authors:  E Ungewickell; C Ehresmann; P Stiegler; R Garrett
Journal:  Nucleic Acids Res       Date:  1975-10       Impact factor: 16.971

2.  The characterisation of a fragment of ribosomal protein S4 that is protected against trypsin digestion by 16S ribosomal RNA of Escherichia coli.

Authors:  C Schulte; E Schiltz; R Garrent
Journal:  Nucleic Acids Res       Date:  1975-06       Impact factor: 16.971

3.  Mining biochemical information: lessons taught by the ribosome.

Authors:  Michelle Whirl-Carrillo; Irene S Gabashvili; Michael Bada; D Rey Banatao; Russ B Altman
Journal:  RNA       Date:  2002-03       Impact factor: 4.942

4.  The location of protein S8 and surrounding elements of 16S rRNA in the 70S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography.

Authors:  L Lancaster; G M Culver; G Z Yusupova; J H Cate; M M Yusupov; H F Noller
Journal:  RNA       Date:  2000-05       Impact factor: 4.942

5.  The structure of Aquifex aeolicus ribosomal protein S8 reveals a unique subdomain that contributes to an extremely tight association with 16S rRNA.

Authors:  Elena Menichelli; Stephen P Edgcomb; Michael I Recht; James R Williamson
Journal:  J Mol Biol       Date:  2011-11-04       Impact factor: 5.469

6.  Interdependencies govern multidomain architecture in ribosomal small subunit assembly.

Authors:  Deepika Calidas; Gloria M Culver
Journal:  RNA       Date:  2010-12-14       Impact factor: 4.942

7.  The crystal structure of ribosomal protein S4 reveals a two-domain molecule with an extensive RNA-binding surface: one domain shows structural homology to the ETS DNA-binding motif.

Authors:  C Davies; R B Gerstner; D E Draper; V Ramakrishnan; S W White
Journal:  EMBO J       Date:  1998-08-17       Impact factor: 11.598

8.  The conformation of 16S RNA in the 30S ribosomal subunit from Escherichia coli.

Authors:  J J Milner; I O Walker
Journal:  Nucleic Acids Res       Date:  1976-03       Impact factor: 16.971

9.  Specific cross-linking of proteins S7 and L4 to ribosomal RNA, by UV irradiation of Escherichia coli ribosomal subunits.

Authors:  K Möller; R Brimacombe
Journal:  Mol Gen Genet       Date:  1975-12-09

10.  Conservation of ribosomal protein binding sites in prokaryotic 16S RNAs.

Authors:  D L Thurlow; R A Zimmermann
Journal:  Proc Natl Acad Sci U S A       Date:  1978-06       Impact factor: 11.205
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