Literature DB >> 6351062

Isolation of Z-DNA-containing plasmids.

R Thomae, S Beck, F M Pohl.   

Abstract

A purified, monoclonal antibody, specific for the left-handed Z-form of poly(dG-dC), was coupled covalently to Sephacryl S-1000 beads. Such an antibody column provides a convenient method to isolate and purify those plasmid DNAs that contain Z-DNA from a large excess of other DNAs, RNA, etc. From a library of Escherichia coli DNA, cloned into the vector plasmid pUC-8, several recombinant plasmids were isolated, which bind to this antibody. Thus, E. coli contains sequences, which in "natural" negatively supercoiled DNA, adopt a left-handed Z-DNA-like conformation.

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Year:  1983        PMID: 6351062      PMCID: PMC384295          DOI: 10.1073/pnas.80.18.5550

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

Review 1.  Structure and reactions of closed duplex DNA.

Authors:  W R Bauer
Journal:  Annu Rev Biophys Bioeng       Date:  1978

2.  A simplified method for cyanogen bromide activation of agarose for affinity chromatography.

Authors:  S C March; I Parikh; P Cuatrecasas
Journal:  Anal Biochem       Date:  1974-07       Impact factor: 3.365

3.  Molecular structure of a left-handed double helical DNA fragment at atomic resolution.

Authors:  A H Wang; G J Quigley; F J Kolpak; J L Crawford; J H van Boom; G van der Marel; A Rich
Journal:  Nature       Date:  1979-12-13       Impact factor: 49.962

4.  Conformational stability of alternating d (CG) oligomers in high salt solution.

Authors:  F Quadrifoglio; G Manzini; M Vasser; K Dinkelspiel; R Crea
Journal:  Nucleic Acids Res       Date:  1981-05-11       Impact factor: 16.971

5.  Rapid and efficient cosmid cloning.

Authors:  D Ish-Horowicz; J F Burke
Journal:  Nucleic Acids Res       Date:  1981-07-10       Impact factor: 16.971

6.  Flipping of cloned d(pCpG)n.d(pCpG)n DNA sequences from right- to left-handed helical structure by salt, Co(III), or negative supercoiling.

Authors:  L J Peck; A Nordheim; A Rich; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1982-08       Impact factor: 11.205

7.  Salt-induced transition between two double-helical forms of oligo (dC-dG).

Authors:  F M Pohl
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1983

8.  "Alternating B-DNA" conformation for the oligo(dG-dC) duplex in high-salt solution.

Authors:  D J Patel; L L Canuel; F M Pohl
Journal:  Proc Natl Acad Sci U S A       Date:  1979-06       Impact factor: 11.205

9.  The high salt form of poly(dG-dC).poly(dG-dC) is left-handed Z-DNA: Raman spectra of crystals and solutions.

Authors:  T J Thamann; R C Lord; A H Wang; A Rich
Journal:  Nucleic Acids Res       Date:  1981-10-24       Impact factor: 16.971

10.  Left-handed DNA in restriction fragments and a recombinant plasmid.

Authors:  J Kłysik; S M Stirdivant; J E Larson; P A Hart; R D Wells
Journal:  Nature       Date:  1981-04-23       Impact factor: 49.962

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  12 in total

1.  Molecular cloning of a Drosophila potential Z-DNA forming sequence hybridizing in situ to a developmentally regulated subdivision of the polytene chromosomes.

Authors:  A Jimenez-Ruiz; J M Requena; F Lancillotti; G Morales; M C Lopez; C Alonso
Journal:  Nucleic Acids Res       Date:  1989-06-26       Impact factor: 16.971

2.  Enzyme-linked immunosorbent assays for Z-DNA.

Authors:  M J Thomas; J S Strobl
Journal:  Biochem J       Date:  1988-10-01       Impact factor: 3.857

3.  Rapid transfer of DNA from agarose gels to nylon membranes.

Authors:  K C Reed; D A Mann
Journal:  Nucleic Acids Res       Date:  1985-10-25       Impact factor: 16.971

4.  d(TG)n.d(CA)n sequences upstream of the rat prolactin gene form Z-DNA and inhibit gene transcription.

Authors:  L H Naylor; E M Clark
Journal:  Nucleic Acids Res       Date:  1990-03-25       Impact factor: 16.971

5.  Molecular structure and transcriptional regulation of the gene for the platelet-derived growth factor alpha receptor in cultured vascular smooth muscle cells.

Authors:  Y Kitami; H Inui; S Uno; T Inagami
Journal:  J Clin Invest       Date:  1995-07       Impact factor: 14.808

6.  The influence of an alternate template conformation on elongating phage T7 RNA polymerase.

Authors:  P Dröge; F M Pohl
Journal:  Nucleic Acids Res       Date:  1991-10-11       Impact factor: 16.971

7.  Dynamics of the B-to-Z transition in supercoiled DNA.

Authors:  F M Pohl
Journal:  Proc Natl Acad Sci U S A       Date:  1986-07       Impact factor: 11.205

8.  Inhibition of DNA synthesis by aphidicolin induces supercoiling in simian virus 40 replicative intermediates.

Authors:  P Dröge; J M Sogo; H Stahl
Journal:  EMBO J       Date:  1985-12-01       Impact factor: 11.598

9.  Electron microscopy of SV40 DNA cross-linked by anti-Z DNA IgG.

Authors:  F K Hagen; D A Zarling; T M Jovin
Journal:  EMBO J       Date:  1985-03       Impact factor: 11.598

10.  Immunological detection of left-handed Z DNA in isolated polytene chromosomes. Effects of ionic strength, pH, temperature and topological stress.

Authors:  M Robert-Nicoud; D J Arndt-Jovin; D A Zarling; T M Jovin
Journal:  EMBO J       Date:  1984-04       Impact factor: 11.598

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