Literature DB >> 6328307

Kinked DNA in crystalline complex with EcoRI endonuclease.

C A Frederick, J Grable, M Melia, C Samudzi, L Jen-Jacobson, B C Wang, P Greene, H W Boyer, J M Rosenberg.   

Abstract

The 3 A electron density map of a co-crystalline recognition complex between EcoRI endonuclease and the oligonucleotide TCGCGAATTCGCG reveals that a tight, complementary interface between the enzyme and the major groove of the DNA is the major determinant of sequence specificity. The DNA contains a torsional kink and other departures from the B conformation which unwind the DNA and thereby widen the major groove in the recognition site.

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Year:  1984        PMID: 6328307     DOI: 10.1038/309327a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  49 in total

1.  Binding and cleavage of DNA with the restriction enzyme EcoR1 using time-resolved second harmonic generation.

Authors:  Benjamin Doughty; Samuel W Kazer; Kenneth B Eisenthal
Journal:  Proc Natl Acad Sci U S A       Date:  2011-11-23       Impact factor: 11.205

2.  Efficient Tn10 transposition into a DNA insertion hot spot in vivo requires the 5-methyl groups of symmetrically disposed thymines within the hot-spot consensus sequence.

Authors:  S Y Lee; D Butler; N Kleckner
Journal:  Proc Natl Acad Sci U S A       Date:  1987-11       Impact factor: 11.205

3.  Sequence specific molecular recognition by a monocationic lexitropsin of the decadeoxyribonucleotide d-[CATGGCCATG]2: structural and dynamic aspects deduced from high field 1H-NMR studies.

Authors:  M Lee; J A Hartley; R T Pon; K Krowicki; J W Lown
Journal:  Nucleic Acids Res       Date:  1988-01-25       Impact factor: 16.971

4.  Structural adaptations in the interaction of EcoRI endonuclease with methylated GAATTC sites.

Authors:  L Jen-Jacobson; L E Engler; D R Lesser; M R Kurpiewski; C Yee; B McVerry
Journal:  EMBO J       Date:  1996-06-03       Impact factor: 11.598

5.  Effects of 2-chloroadenine substitution in DNA on restriction endonuclease cleavage reactions.

Authors:  P Hentosh; J C McCastlain
Journal:  Nucleic Acids Res       Date:  1991-06-11       Impact factor: 16.971

Review 6.  Structural aspects of protein-DNA recognition.

Authors:  P S Freemont; A N Lane; M R Sanderson
Journal:  Biochem J       Date:  1991-08-15       Impact factor: 3.857

7.  Molecular genetic study of human arginase deficiency.

Authors:  W W Grody; D Klein; A E Dodson; R M Kern; P B Wissmann; B K Goodman; P Bassand; B Marescau; S S Kang; J V Leonard
Journal:  Am J Hum Genet       Date:  1992-06       Impact factor: 11.025

8.  A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation.

Authors:  M A Young; G Ravishanker; D L Beveridge
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

9.  Electrospray ionization mass spectrometric characterization of photocrosslinked DNA-EcoRI DNA methyltransferase complexes.

Authors:  D L Wong; J G Pavlovich; N O Reich
Journal:  Nucleic Acids Res       Date:  1998-01-15       Impact factor: 16.971

10.  Thermodynamic and structural basis for relaxation of specificity in protein-DNA recognition.

Authors:  Paul J Sapienza; Tianyi Niu; Michael R Kurpiewski; Arabela Grigorescu; Linda Jen-Jacobson
Journal:  J Mol Biol       Date:  2013-09-14       Impact factor: 5.469

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