Literature DB >> 6322111

Nucleotide sequence of the dsRNA genomic segment 7 of Simian 11 rotavirus.

G W Both, A R Bellamy, L J Siegman.   

Abstract

A full length cDNA copy of dsRNA segment seven of Simian 11 rotavirus has been obtained by standard molecular cloning techniques. Segment seven codes for the non-structural viral protein NCVP4 and is 1104 nucleotides in length with putative 5'- and 3'- terminal non-coding regions of 25 and 134 residues respectively. The longest open reading frame of 315 codons extends from nucleotide 26 to 970 inclusive. However, the presence nearby of two other AUG codons makes it unclear which codon is used for initiation. The second AUG conforms to the Kozak consensus sequence and if utilised, would yield a protein 312 amino acids in length with a nett charge at pH7 of -2.5. Determination of the gene 7 sequence indicates that terminal sequence conservation among rotavirus gene segments is limited to three and two nucleotides at the 5' and 3' ends of the plus strand, respectively.

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Year:  1984        PMID： 6322111      PMCID： PMC318603          DOI： 10.1093/nar/12.3.1621

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  10 in total

1.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

Review 2.  Molecular mechanisms of variation in influenza viruses.

Authors:  R G Webster; W G Laver; G M Air; G C Schild
Journal:  Nature       Date:  1982-03-11       Impact factor: 49.962

3.  Nucleotide sequence of the gene encoding the serotype-specific glycoprotein of UK bovine rotavirus.

Authors:  T C Elleman; P A Hoyne; M L Dyall-Smith; I H Holmes; A A Azad
Journal:  Nucleic Acids Res       Date:  1983-07-25       Impact factor: 16.971

4.  Serotype-specific glycoprotein of simian 11 rotavirus: coding assignment and gene sequence.

Authors:  G W Both; J S Mattick; A R Bellamy
Journal:  Proc Natl Acad Sci U S A       Date:  1983-05       Impact factor: 11.205

5.  Cloning the double-stranded RNA genes of reovirus: sequence of the cloned S2 gene.

Authors:  L W Cashdollar; J Esparza; G R Hudson; R Chmelo; P W Lee; W K Joklik
Journal:  Proc Natl Acad Sci U S A       Date:  1982-12       Impact factor: 11.205

6.  Possible role of flanking nucleotides in recognition of the AUG initiator codon by eukaryotic ribosomes.

Authors:  M Kozak
Journal:  Nucleic Acids Res       Date:  1981-10-24       Impact factor: 16.971

7.  A general strategy for cloning double-stranded RNA: nucleotide sequence of the Simian-11 rotavirus gene 8.

Authors:  G W Both; A R Bellamy; J E Street; L J Siegman
Journal:  Nucleic Acids Res       Date:  1982-11-25       Impact factor: 16.971

8.  A system for shotgun DNA sequencing.

Authors:  J Messing; R Crea; P H Seeburg
Journal:  Nucleic Acids Res       Date:  1981-01-24       Impact factor: 16.971

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  Nucleotide sequence of reovirus genome segment S3, encoding non-structural protein sigma NS.

Authors:  M A Richardson; Y Furuichi
Journal:  Nucleic Acids Res       Date:  1983-09-24       Impact factor: 16.971
  10 in total
  9 in total

1.  Products of the porcine group C rotavirus NSP3 gene bind specifically to double-stranded RNA and inhibit activation of the interferon-induced protein kinase PKR.

Authors:  J O Langland; S Pettiford; B Jiang; B L Jacobs
Journal:  J Virol       Date:  1994-06       Impact factor: 5.103

Review 2.  Rotavirus gene structure and function.

Authors:  M K Estes; J Cohen
Journal:  Microbiol Rev       Date:  1989-12

3.  Nucleotide sequence of porcine rotavirus (OSU strain) gene segments 7, 8, and 9.

Authors:  K Rushlow; A McNab; K Olson; F Maxwell; I Maxwell; G Stiegler
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

4.  Rotavirus variant replicates efficiently although encoding an aberrant NSP3 that fails to induce nuclear localization of poly(A)-binding protein.

Authors:  Michelle M Arnold; Catie Small Brownback; Zenobia F Taraporewala; John T Patton
Journal:  J Gen Virol       Date:  2012-03-21       Impact factor: 3.891

5.  Expression of two bovine rotavirus non-structural proteins (NSP2, NSP3) in the baculovirus system and production of monoclonal antibodies directed against the expressed proteins.

Authors:  C Aponte; N M Mattion; M K Estes; A Charpilienne; J Cohen
Journal:  Arch Virol       Date:  1993       Impact factor: 2.574

6.  Cell-line-induced mutation of the rotavirus genome alters expression of an IRF3-interacting protein.

Authors:  Karen Kearney; Dayue Chen; Zenobia F Taraporewala; Patrice Vende; Yasutaka Hoshino; Maria Alejandra Tortorici; Mario Barro; John T Patton
Journal:  EMBO J       Date:  2004-09-16       Impact factor: 11.598

7.  Rotavirus genome segment 7 (NSP3) is a determinant of extraintestinal spread in the neonatal mouse.

Authors:  Eric C Mossel; Robert F Ramig
Journal:  J Virol       Date:  2002-07       Impact factor: 5.103

8.  Viruses and cells with mutations affecting viral entry are selected during persistent rotavirus infections of MA104 cells.

Authors:  J Z Mrukowicz; J D Wetzel; M I Goral; A B Fogo; P F Wright; T S Dermody
Journal:  J Virol       Date:  1998-04       Impact factor: 5.103

9.  Nucleotide sequence of bovine rotavirus gene 1 and expression of the gene product in baculovirus.

Authors:  J Cohen; A Charpilienne; S Chilmonczyk; M K Estes
Journal:  Virology       Date:  1989-07       Impact factor: 3.616
  9 in total

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