Literature DB >> 6320100

A convenient and adaptable package of computer programs for DNA and protein sequence management, analysis and homology determination.

J Pustell, F C Kafatos.   

Abstract

We describe the further development of a widely used package of DNA/protein sequence analysis programs (1). Important revisions have been made based on user experience, and new features, multi-user capability, and a set of large scale homology programs have been added. The programs are very user friendly, economical of time and memory, and extremely transportable. They are written in a version of FORTRAN which will compile, with a few defined changes, as FORTRAN 66, FORTRAN 77, FORTRAN IV, FORTRAN IV+, and others. They are running on a variety of microcomputers, minicomputers, and mainframes, in both single user and multi-user configurations.

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Year:  1984        PMID: 6320100      PMCID: PMC321079          DOI: 10.1093/nar/12.1part2.643

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  7 in total

1.  A general method applicable to the search for similarities in the amino acid sequence of two proteins.

Authors:  S B Needleman; C D Wunsch
Journal:  J Mol Biol       Date:  1970-03       Impact factor: 5.469

2.  Computer analysis of nucleic acids and proteins.

Authors:  C L Queen; L J Korn
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

3.  A convenient and adaptable package of DNA sequence analysis programs for microcomputers.

Authors:  J Pustell; F C Kafatos
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

4.  Statistical characterization of nucleic acid sequence functional domains.

Authors:  T F Smith; M S Waterman; J R Sadler
Journal:  Nucleic Acids Res       Date:  1983-04-11       Impact factor: 16.971

5.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

6.  Sequence of the human insulin gene.

Authors:  G I Bell; R L Pictet; W J Rutter; B Cordell; E Tischer; H M Goodman
Journal:  Nature       Date:  1980-03-06       Impact factor: 49.962

7.  The structure and evolution of the two nonallelic rat preproinsulin genes.

Authors:  P Lomedico; N Rosenthal; A Efstratidadis; W Gilbert; R Kolodner; R Tizard
Journal:  Cell       Date:  1979-10       Impact factor: 41.582

  7 in total
  128 in total

1.  Cloning of SHV-2, OHIO-1, and OXA-6 beta-lactamases and cloning and sequencing of SHV-1 beta-lactamase.

Authors:  J Mercier; R C Levesque
Journal:  Antimicrob Agents Chemother       Date:  1990-08       Impact factor: 5.191

2.  RIP60, a mammalian origin-binding protein, enhances DNA bending near the dihydrofolate reductase origin of replication.

Authors:  M S Caddle; L Dailey; N H Heintz
Journal:  Mol Cell Biol       Date:  1990-12       Impact factor: 4.272

3.  Regulation of expression of a baculovirus ecdysteroid UDPglucosyltransferase gene.

Authors:  D R O'Reilly; L K Miller
Journal:  J Virol       Date:  1990-03       Impact factor: 5.103

4.  Isolation and sequence analysis of a chalcone synthase cDNA of Matthiola incana R. Br. (Brassicaceae).

Authors:  B Epping; M Kittel; B Ruhnau; V Hemleben
Journal:  Plant Mol Biol       Date:  1990-06       Impact factor: 4.076

5.  Sequences of human immunoglobulin switch regions: implications for recombination and transcription.

Authors:  F C Mills; J S Brooker; R D Camerini-Otero
Journal:  Nucleic Acids Res       Date:  1990-12-25       Impact factor: 16.971

6.  Structural analysis of two genes encoding divergent forms of yeast cytochrome c oxidase subunit V.

Authors:  M G Cumsky; C E Trueblood; C Ko; R O Poyton
Journal:  Mol Cell Biol       Date:  1987-10       Impact factor: 4.272

7.  Nucleotide sequence of an Escherichia coli chromosomal hemolysin.

Authors:  T Felmlee; S Pellett; R A Welch
Journal:  J Bacteriol       Date:  1985-07       Impact factor: 3.490

8.  Nucleotide sequence of Klebsiella pneumoniae lac genes.

Authors:  W E Buvinger; M Riley
Journal:  J Bacteriol       Date:  1985-09       Impact factor: 3.490

9.  Expression in recombinant vaccinia virus of the equine herpesvirus 1 gene encoding glycoprotein gp13 and protection of immunized animals.

Authors:  P X Guo; S Goebel; S Davis; M E Perkus; B Languet; P Desmettre; G Allen; E Paoletti
Journal:  J Virol       Date:  1989-10       Impact factor: 5.103

10.  Dictyostelium discoideum myosin: isolation and characterization of cDNAs encoding the regulatory light chain.

Authors:  S R Tafuri; A M Rushforth; E R Kuczmarski; R L Chisholm
Journal:  Mol Cell Biol       Date:  1989-07       Impact factor: 4.272

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