Literature DB >> 6313946

The 1723 element: a long, homogeneous, highly repeated DNA unit interspersed in the genome of Xenopus laevis.

B K Kay, I B Dawid.   

Abstract

We describe a highly repeated DNA element in the Xenopus laevis genome. This sequence, named the 1723 element, was first identified among sequences that are transcribed during embryonic development. The element is present in about 8500 copies per haploid genome, which together accounts for about 2.4% of the genome. Most copies of the element have highly conserved restriction maps, and are interspersed in the genome. The copies range in size from 6000 to 10,000 base-pairs due to an expandable region that contains variable numbers of a tandemly repeating 183 to 204 base-pair unit. The element is framed by an imperfect 18 base-pair inverted sequence, and inverted repeats of 180 to 185 base-pairs are nearby. Sequence analysis of DNA adjacent to three cloned elements shows that the elements are flanked by 8 base-pair direct repeats. These and other properties of 1723 suggest that it may be transposable.

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Year:  1983        PMID: 6313946     DOI: 10.1016/s0022-2836(83)80122-3

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  18 in total

1.  Temporal uncoupling of the DNA methylome and transcriptional repression during embryogenesis.

Authors:  Ozren Bogdanovic; Steven W Long; Simon J van Heeringen; Arie B Brinkman; Jose Luis Gómez-Skarmeta; Hendrik G Stunnenberg; Peter L Jones; Gert Jan C Veenstra
Journal:  Genome Res       Date:  2011-06-02       Impact factor: 9.043

2.  Amphibian oocytes and sphere organelles: are the U snRNA genes amplified?

Authors:  S Phillips; M Cotten; F Laengle-Rouault; G Schaffner; M L Birnstiel
Journal:  Chromosoma       Date:  1992-08       Impact factor: 4.316

3.  hATpin, a family of MITE-like hAT mobile elements conserved in diverse plant species that forms highly stable secondary structures.

Authors:  Santiago Moreno-Vázquez; Jianchang Ning; Blake C Meyers
Journal:  Plant Mol Biol       Date:  2005-08       Impact factor: 4.076

Review 4.  Differential gene expression in vertebrate embryos.

Authors:  Igor B Dawid
Journal:  J Biol Chem       Date:  2009-01-21       Impact factor: 5.157

5.  Sequence organization and developmentally regulated transcription of a family of repetitive DNA sequences of Xenopus laevis.

Authors:  C D Riggs; J H Taylor
Journal:  Nucleic Acids Res       Date:  1987-11-25       Impact factor: 16.971

6.  The sequence of a large L1Md element reveals a tandemly repeated 5' end and several features found in retrotransposons.

Authors:  D D Loeb; R W Padgett; S C Hardies; W R Shehee; M B Comer; M H Edgell; C A Hutchison
Journal:  Mol Cell Biol       Date:  1986-01       Impact factor: 4.272

7.  Tx1: a transposable element from Xenopus laevis with some unusual properties.

Authors:  J E Garrett; D Carroll
Journal:  Mol Cell Biol       Date:  1986-03       Impact factor: 4.272

8.  The mitochondrial plasmid from Neurospora intermedia strain Labelle-1b contains a long open reading frame with blocks of amino acids characteristic of reverse transcriptases and related proteins.

Authors:  S Pande; E G Lemire; F E Nargang
Journal:  Nucleic Acids Res       Date:  1989-03-11       Impact factor: 16.971

9.  Characterization of highly and moderately repetitive 500 bp Eco RI fragments from Xenopus laevis DNA.

Authors:  S Hummel; W Meyerhof; E Korge; W Knöchel
Journal:  Nucleic Acids Res       Date:  1984-06-25       Impact factor: 16.971

Review 10.  Horizontal transfer of P elements and other short inverted repeat transposons.

Authors:  M G Kidwell
Journal:  Genetica       Date:  1992       Impact factor: 1.082

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