Literature DB >> 6304643

BAL 31 nuclease as a probe in concentrated salt for the B-Z DNA junction.

M W Kilpatrick, C F Wei, H B Gray, R D Wells.   

Abstract

The BAL 31 nuclease, an extracellular nuclease from A. espejiana, specifically recognizes and cleaves the salt induced conformational junction between B and Z-DNA. Short segments of (dC-dG) left-handed Z-helix, comprising approximately 1% of the total DNA, are specifically detected within two different recombinant plasmids. The BAL 31 enzyme is highly resistant to inactivation by the presence of high concentrations of a variety of electrolytes that stabilize left-handed helices, is active at physiological pH, and can be used to probe both linear and circular DNAs. Additionally, the nuclease cleaves left-handed (dC-dG)n only very poorly, if at all. Thus, the BAL 31 nuclease can be utilized as a probe for helical junctions and consequently for segments of left-handed DNA that might exist within predominantly right-handed naturally occurring genomes.

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Year:  1983        PMID: 6304643      PMCID: PMC326004          DOI: 10.1093/nar/11.11.3811

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  20 in total

1.  A sensitive endonuclease probe for lesions in deoxyribonucleic acid helix structure produced by carcinogenic or mutagenic agents.

Authors:  R J Legerski; H B Gray; D L Robberson
Journal:  J Biol Chem       Date:  1977-12-10       Impact factor: 5.157

2.  Labeling deoxyribonucleic acid to high specific activity in vitro by nick translation with DNA polymerase I.

Authors:  P W Rigby; M Dieckmann; C Rhodes; P Berg
Journal:  J Mol Biol       Date:  1977-06-15       Impact factor: 5.469

3.  Construction and mapping of recombinant plasmids used for the preparation of DNA fragments containing the Escherichia coli lactose operator and promoter.

Authors:  S C Hardies; R K Patient; R D Klein; F Ho; W S Reznikoff; R D Wells
Journal:  J Biol Chem       Date:  1979-06-25       Impact factor: 5.157

4.  Physicochemical studies on polydeoxyribonucleotides containing defined repeating nucleotide sequences.

Authors:  R D Wells; J E Larson; R C Grant; B E Shortle; C R Cantor
Journal:  J Mol Biol       Date:  1970-12-28       Impact factor: 5.469

5.  Conditions which cause the right-handed to left-handed DNA conformational transitions. Evidence for several types of left-handed DNA structures in solution.

Authors:  W Zacharias; J E Larson; J Klysik; S M Stirdivant; R D Wells
Journal:  J Biol Chem       Date:  1982-03-25       Impact factor: 5.157

6.  DNA structure and gene regulation.

Authors:  R D Wells; T C Goodman; W Hillen; G T Horn; R D Klein; J E Larson; U R Müller; S K Neuendorf; N Panayotatos; S M Stirdivant
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1980

7.  Conformation and dynamics in a Z-DNA tetramer.

Authors:  H R Drew; R E Dickerson
Journal:  J Mol Biol       Date:  1981-11-15       Impact factor: 5.469

8.  Extracellular nucleases of Pseudomonas BAL 31. I. Characterization of single strand-specific deoxyriboendonuclease and double-strand deoxyriboexonuclease activities.

Authors:  H B Gray; D A Ostrander; J L Hodnett; R J Legerski; D L Robberson
Journal:  Nucleic Acids Res       Date:  1975-09       Impact factor: 16.971

9.  Extracellular nucleases of Alteromonas espejiana BAL 31.IV. The single strand-specific deoxyriboendonuclease activity as a probe for regions of altered secondary structure in negatively and positively supercoiled closed circular DNA.

Authors:  P P Lau; H B Gray
Journal:  Nucleic Acids Res       Date:  1979-01       Impact factor: 16.971

10.  Left-handed DNA in restriction fragments and a recombinant plasmid.

Authors:  J Kłysik; S M Stirdivant; J E Larson; P A Hart; R D Wells
Journal:  Nature       Date:  1981-04-23       Impact factor: 49.962

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  13 in total

1.  Reaction conditions affect the specificity of bromoacetaldehyde as a probe for DNA cruciforms and B-Z junctions.

Authors:  M J McLean; J E Larson; F Wohlrab; R D Wells
Journal:  Nucleic Acids Res       Date:  1987-09-11       Impact factor: 16.971

2.  Enzymes used in molecular biology: a useful guide.

Authors:  Laure Rittié; Bernard Perbal
Journal:  J Cell Commun Signal       Date:  2008-09-03       Impact factor: 5.782

3.  Preliminary spectroscopic characterization of a synthetic DNA oligomer containing a B-Z junction at high salt.

Authors:  R D Sheardy
Journal:  Nucleic Acids Res       Date:  1988-02-11       Impact factor: 16.971

4.  Non-contiguous regions of Z-DNA in a DNA dodecamer.

Authors:  N Hua; G A van der Marel; J H van Boom; J Feigon
Journal:  Nucleic Acids Res       Date:  1989-10-11       Impact factor: 16.971

5.  Restriction endonucleases can be used to study B-Z junctions in supercoiled DNA.

Authors:  F Azorin; R Hahn; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1984-09       Impact factor: 11.205

6.  Mung bean nuclease cleavage of a dA + dT-rich sequence or an inverted repeat sequence in supercoiled PM2 DNA depends on ionic environment.

Authors:  L G Sheflin; D Kowalski
Journal:  Nucleic Acids Res       Date:  1984-09-25       Impact factor: 16.971

7.  HhaI methylase and restriction endonuclease as probes for B to Z DNA conformational changes in d(GCGC) sequences.

Authors:  W Zacharias; J E Larson; M W Kilpatrick; R D Wells
Journal:  Nucleic Acids Res       Date:  1984-10-25       Impact factor: 16.971

8.  NMR, CD and IR spectroscopies of a tridecanucleotide containing a no-base residue: coexistence of B and Z conformations.

Authors:  S Pochet; T Huynh-Dinh; J M Neumann; S Tran-Dinh; S Adam; J Taboury; E Taillandier; J Igolen
Journal:  Nucleic Acids Res       Date:  1986-01-24       Impact factor: 16.971

9.  Stress-induced cruciform formation in a cloned d(CATG)10 sequence.

Authors:  L H Naylor; D M Lilley; J H van de Sande
Journal:  EMBO J       Date:  1986-09       Impact factor: 11.598

10.  Different Z DNA forming sequences are revealed in phi X174 RFI by high resolution darkfield immuno-electron microscopy.

Authors:  B Revet; D A Zarling; T M Jovin; E Delain
Journal:  EMBO J       Date:  1984-12-20       Impact factor: 11.598

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