Literature DB >> 6281466

Long terminal repeat of murine retroviral DNAs: sequence analysis, host-proviral junctions, and preintegration site.

C Van Beveren, E Rands, S K Chattopadhyay, D R Lowy, I M Verma.   

Abstract

The nucleotide sequence of the long terminal repeat (LTR) of three murine retroviral DNAs has been determined. The data indicate that the U5 region (sequences originating from the 5' end of the genome) of various LTRs is more conserved than the U3 region (sequences from the 3' end of the genome). The location and sequence of the control elements such as the 5' cap, "TATA-like" sequences, "CCAAT-box," and presumptive polyadenylic acid addition signal AATAAA in the various LTRs are nearly identical. Some murine retroviral DNAs contain a duplication of sequences within the LTR ranging in size from 58 to 100 base pairs. A variant of molecularly cloned Moloney murine sarcoma virus DNA in which one of the two LTRs integrated into the viral DNA was also analyzed. A 4-base-pair duplication was generated at the site of integration of LTR in the viral DNA. The host-viral junction of two molecularly cloned AKR-murine leukemia virus DNAs (clones 623 and 614) was determined. In the case of AKR-623 DNA, a 3- or 4-base-pair direct repeat of cellular sequences flanking the viral DNA was observed. However, AKR-614 DNA contained a 5-base-pair repeat of cellular sequences. The nucleotide sequence of the preintegration site of AKR-623 DNA revealed that the cellular sequences duplicated during integration are present only once. Finally, a striking homology between the sequences flanking the preintegration site and viral LTRs was observed.

Entities:  

Mesh:

Substances:

Year:  1982        PMID: 6281466      PMCID: PMC256783     

Source DB:  PubMed          Journal:  J Virol        ISSN: 0022-538X            Impact factor:   5.103


  45 in total

1.  Analysis of unintegrated avian RNA tumor virus double-stranded DNA intermediates.

Authors:  T W Hsu; J L Sabran; G E Mark; R V Guntaka; J M Taylor
Journal:  J Virol       Date:  1978-12       Impact factor: 5.103

2.  Kinetics of synthesis, structure and purification of avian sarcoma virus-specific DNA made in the cytoplasm of acutely infected cells.

Authors:  H E Varmus; S Heasley; H J Kung; H Oppermann; V C Smith; J M Bishop; P R Shank
Journal:  J Mol Biol       Date:  1978-03-25       Impact factor: 5.469

3.  Mapping unintegrated avian sarcoma virus DNA: termini of linear DNA bear 300 nucleotides present once or twice in two species of circular DNA.

Authors:  P R Shank; S H Hughes; H J Kung; J E Majors; N Quintrell; R V Guntaka; J M Bishop; H E Varmus
Journal:  Cell       Date:  1978-12       Impact factor: 41.582

4.  Proviruses of avian sarcoma virus are terminally redundant, co-extensive with unintegrated linear DNA and integrated at many sites.

Authors:  S H Hughes; P R Shank; D H Spector; H J Kung; J M Bishop; H E Varmus; P K Vogt; M L Breitman
Journal:  Cell       Date:  1978-12       Impact factor: 41.582

5.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

6.  Phenotypic expression in E. coli of a DNA sequence coding for mouse dihydrofolate reductase.

Authors:  A C Chang; J H Nunberg; R J Kaufman; H A Erlich; R T Schimke; S N Cohen
Journal:  Nature       Date:  1978-10-19       Impact factor: 49.962

Review 7.  Retroviruses.

Authors:  J M Bishop
Journal:  Annu Rev Biochem       Date:  1978       Impact factor: 23.643

8.  3' non-coding region sequences in eukaryotic messenger RNA.

Authors:  N J Proudfoot; G G Brownlee
Journal:  Nature       Date:  1976-09-16       Impact factor: 49.962

Review 9.  The reverse transcriptase.

Authors:  I M Verma
Journal:  Biochim Biophys Acta       Date:  1977-03-21

10.  Cloning human fetal gamma globin and mouse alpha-type globin DNA: preparation and screening of shotgun collections.

Authors:  F R Blattner; A E Blechl; K Denniston-Thompson; H E Faber; J E Richards; J L Slightom; P W Tucker; O Smithies
Journal:  Science       Date:  1978-12-22       Impact factor: 47.728

View more
  92 in total

1.  Characterization of retrovirus-host DNA junctions in cells deficient in nonhomologous-end joining.

Authors:  K Taganov; R Daniel; R A Katz; O Favorova; A M Skalka
Journal:  J Virol       Date:  2001-10       Impact factor: 5.103

2.  Isolation and analysis of retroviral integration targets by solo long terminal repeat inverse PCR.

Authors:  Yi Feng Jin; Toshio Ishibashi; Akio Nomoto; Michiaki Masuda
Journal:  J Virol       Date:  2002-06       Impact factor: 5.103

3.  Sequence instability in the long terminal repeats of avian spleen necrosis virus and reticuloendotheliosis virus.

Authors:  G Notani; W Sauerbier
Journal:  J Mol Evol       Date:  1987       Impact factor: 2.395

4.  The number of a U3 repeat box acting as an enhancer in long terminal repeats of polytropic replication-competent porcine endogenous retroviruses dynamically fluctuates during serial virus passages in human cells.

Authors:  G Scheef; N Fischer; U Krach; R R Tönjes
Journal:  J Virol       Date:  2001-08       Impact factor: 5.103

5.  A new family of LTR-like sequences abundantly expressed in rat tumors.

Authors:  N Suzuki; T Fujiyoshi; Y Maehara; K Takahashi; M Yamamoto; H Endo
Journal:  Nucleic Acids Res       Date:  1986-12-09       Impact factor: 16.971

6.  Different relative expression from two murine leukemia virus long terminal repeats in unintegrated transfected DNA and in integrated retroviral vector proviruses.

Authors:  K Paludan; H Y Dai; M Duch; P Jørgensen; N O Kjeldgaard; F S Pedersen
Journal:  J Virol       Date:  1989-12       Impact factor: 5.103

7.  Insertional activation of N-myc by endogenous Moloney-like murine retrovirus sequences in macrophage cell lines derived from myeloma cell line-macrophage hybrids.

Authors:  M Setoguchi; Y Higuchi; S Yoshida; N Nasu; Y Miyazaki; S Akizuki; S Yamamoto
Journal:  Mol Cell Biol       Date:  1989-10       Impact factor: 4.272

8.  Generation of infectious Moloney murine leukemia viruses with deletions in the U3 portion of the long terminal repeat.

Authors:  R Hanecak; S Mittal; B R Davis; H Fan
Journal:  Mol Cell Biol       Date:  1986-12       Impact factor: 4.272

9.  Nonreciprocal pseudotyping: murine leukemia virus proteins cannot efficiently package spleen necrosis virus-based vector RNA.

Authors:  J L Certo; B F Shook; P D Yin; J T Snider; W S Hu
Journal:  J Virol       Date:  1998-07       Impact factor: 5.103

10.  Free and integrated recombinant murine leukemia virus DNAs appear in preleukemic thymuses of AKR/J mice.

Authors:  W Herr; W Gilbert
Journal:  J Virol       Date:  1984-04       Impact factor: 5.103

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.