Literature DB >> 6273811

The initiator tRNA genes of Drosophila melanogaster: evidence for a tRNA pseudogene.

S Sharp, D DeFranco, M Silberklang, H A Hosbach, T Schmidt, E Kubli, J P Gergen, P C Wensink, D Söll.   

Abstract

We have isolated four segments of Drosophila melanogaster DNA that hybridize to homologous initiator tRNAMet. Three of the cloned fragments contain initiator tRNA genes, each of which can be transcribed in vitro. The fourth clone, pPW568, contains an initiator tRNA pseudogene which is not transcribed in vitro by RNA polymerase III. The pseudogene is contained in a 1.15 kb DNA fragment. This fragment has the characteristics of dispersed repetitive DNA and hybridizes in situ to at least 30 sites in the Drosophila genome. The arrangement of the initiator tRNA genes we have isolated, is different to that of other Drosophila tRNA gene families. The initiator tRNA genes are not clustered nor intermingled with other tRNA genes. They occur as single copies within an approximately 415-bp repeat segment, which is separated from other initiator tRNA genes by a mean distance of 17 kb. In situ hybridization to polytene chromosomes localizes these genes to the 61D region of the Drosophila genome. Hybridization analysis of genomic DNA indicates the presence of 8-9 non-allelic initiator tRNA genes in Drosophila melanogaster.

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Year:  1981        PMID: 6273811      PMCID: PMC327570          DOI: 10.1093/nar/9.22.5867

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  31 in total

1.  Chain length determination of small double- and single-stranded DNA molecules by polyacrylamide gel electrophoresis.

Authors:  T Maniatis; A Jeffrey; H van deSande
Journal:  Biochemistry       Date:  1975-08-26       Impact factor: 3.162

2.  Detection of specific sequences among DNA fragments separated by gel electrophoresis.

Authors:  E M Southern
Journal:  J Mol Biol       Date:  1975-11-05       Impact factor: 5.469

3.  Detection of two restriction endonuclease activities in Haemophilus parainfluenzae using analytical agarose--ethidium bromide electrophoresis.

Authors:  P A Sharp; B Sugden; J Sambrook
Journal:  Biochemistry       Date:  1973-07-31       Impact factor: 3.162

4.  Nature of Col E 1 plasmid replication in Escherichia coli in the presence of the chloramphenicol.

Authors:  D B Clewell
Journal:  J Bacteriol       Date:  1972-05       Impact factor: 3.490

5.  A simple method for DNA restriction site mapping.

Authors:  H O Smith; M L Birnstiel
Journal:  Nucleic Acids Res       Date:  1976-09       Impact factor: 16.971

6.  Transcription of cloned tRNA and 5S RNA genes in a Drosophila cell free extract.

Authors:  T Dingermann; S Sharp; B Appel; D DeFranco; S Mount; R Heiermann; O Pongs; D Söll
Journal:  Nucleic Acids Res       Date:  1981-08-25       Impact factor: 16.971

7.  Messenger RNA in heat-shocked Drosophila cells.

Authors:  A Spradling; M L Pardue; S Penman
Journal:  J Mol Biol       Date:  1977-02-05       Impact factor: 5.469

8.  Analysis of tRNAs during the development of Drosophila.

Authors:  B N White; G M Tener; J Holden; D T Suzuki
Journal:  Dev Biol       Date:  1973-07       Impact factor: 3.582

9.  On the redundancy of DNA complementary to amino acid tranfer RNA and its absence from the nucleolar organizer region of Drosophila melanogaster.

Authors:  F M Ritossa; K C Atwood; S Spiegelman
Journal:  Genetics       Date:  1966-08       Impact factor: 4.562

10.  Base sequence complexity of the stable RNA species of Drosophila melanogaster.

Authors:  L Weber; E Berger
Journal:  Biochemistry       Date:  1976-12-14       Impact factor: 3.162

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  22 in total

1.  Compilation of tRNA sequences and sequences of tRNA genes.

Authors:  M Sprinzl; N Dank; S Nock; A Schön
Journal:  Nucleic Acids Res       Date:  1991-04-25       Impact factor: 16.971

2.  Cleavage of tRNA within the mature tRNA sequence by the catalytic RNA of RNase P: implication for the formation of the primer tRNA fragment for reverse transcription in copia retrovirus-like particles.

Authors:  Y Kikuchi; N Sasaki; Y Ando-Yamagami
Journal:  Proc Natl Acad Sci U S A       Date:  1990-10       Impact factor: 11.205

3.  A copia primer pseudogene possibly generated by an aberrant reverse transcription of a copia-related element in Drosophila.

Authors:  K Saigo
Journal:  Nucleic Acids Res       Date:  1986-10-10       Impact factor: 16.971

4.  Conservatism of sites of tRNA loci among the linkage groups of several Drosophila species.

Authors:  J Tonzetich; S Hayashi; T A Grigliatti
Journal:  J Mol Evol       Date:  1990-02       Impact factor: 2.395

5.  Isolation and nucleotide sequence of a mouse histidine tRNA gene.

Authors:  J H Han; J D Harding
Journal:  Nucleic Acids Res       Date:  1982-08-25       Impact factor: 16.971

6.  A DNA sequence of Drosophila melanogaster with a differential telomeric distribution.

Authors:  R Renkawitz-Pohl; S Bialojan
Journal:  Chromosoma       Date:  1984       Impact factor: 4.316

7.  Structure and evolution of a mouse tRNA gene cluster encoding tRNAAsp, tRNAGly and tRNAGlu and an unlinked, solitary gene encoding tRNAAsp.

Authors:  J E Looney; J D Harding
Journal:  Nucleic Acids Res       Date:  1983-12-20       Impact factor: 16.971

8.  Human U1 RNA pseudogenes may be generated by both DNA- and RNA-mediated mechanisms.

Authors:  R A Denison; A M Weiner
Journal:  Mol Cell Biol       Date:  1982-07       Impact factor: 4.272

9.  Genes for tRNALys5 from Drosophila melanogaster.

Authors:  D DeFranco; K B Burke; S Hayashi; G M Tener; R C Miller; D Söll
Journal:  Nucleic Acids Res       Date:  1982-10-11       Impact factor: 16.971

10.  Glutamate tRNA genes are adjacent to 5S RNA genes in Drosophila and reveal a conserved upstream sequence (the ACT-TA box).

Authors:  Z K Indik; K D Tartof
Journal:  Nucleic Acids Res       Date:  1982-07-24       Impact factor: 16.971

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