Literature DB >> 6272218

Sequence organization of the spacer in the ribosomal genes of Xenopus clivii and Xenopus borealis.

R Bach, B Allet, M Crippa.   

Abstract

We have studied in X. clivii and X. borealis cloned EcoRI fragments containing the spacer located between the 28S and 18S ribosomal genes. We report for these two species the nucleotide sequences at both ends of the NTS region with special emphasis on the sequences around the transcription initiation site of the 40S rRNA precursor. In X. clivii the location of the 5' end of the precursor was mapped. In both species the sequences around the 40S origin are duplicated in the NTS. Nucleotide sequence comparison has revealed a stretch of 13 identical bases around the transcription initiation site of X. laevis and X. clivii. The same sequence is also present at the presumptive transcription initiation site of X. borealis rDNA.

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Year:  1981        PMID: 6272218      PMCID: PMC327522          DOI: 10.1093/nar/9.20.5311

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  31 in total

1.  Colony hybridization: a method for the isolation of cloned DNAs that contain a specific gene.

Authors:  M Grunstein; D S Hogness
Journal:  Proc Natl Acad Sci U S A       Date:  1975-10       Impact factor: 11.205

2.  Long range periodicities in mouse satellite DNA.

Authors:  E M Southern
Journal:  J Mol Biol       Date:  1975-05-05       Impact factor: 5.469

3.  A comparison of the structural organization of amplified ribosomal DNA from Xenopus mulleri and Xenopus laevis.

Authors:  P K Wellauer; R H Reeder
Journal:  J Mol Biol       Date:  1975-05-15       Impact factor: 5.469

4.  Arrangement of the 5-8 S RNA cistrons in the genome of Xenopus laevis.

Authors:  J Speirs; M Birnstiel
Journal:  J Mol Biol       Date:  1974-08-05       Impact factor: 5.469

5.  Denaturation map of the ribosomal DNA of Xenopus laevis.

Authors:  P C Wensink; D D Brown
Journal:  J Mol Biol       Date:  1971-09-14       Impact factor: 5.469

6.  Gene linkage by RNA-DNA hybridization. II. Arrangement of the redundant gene sequences for 28 s and 18 s ribosomal RNA.

Authors:  D D Brown; C S Weber
Journal:  J Mol Biol       Date:  1968-06-28       Impact factor: 5.469

7.  A simple method for DNA restriction site mapping.

Authors:  H O Smith; M L Birnstiel
Journal:  Nucleic Acids Res       Date:  1976-09       Impact factor: 16.971

8.  The molecular basis for length heterogeneity in ribosomal DNA from Xenopus laevis.

Authors:  P K Wellauer; I B Dawid; D D Brown; R H Reeder
Journal:  J Mol Biol       Date:  1976-08-25       Impact factor: 5.469

9.  Amplified ribosomal DNA from Xenopus laevis has heterogeneous spacer lengths.

Authors:  P K Wellauer; R H Reeder; D Carroll; D D Brown; A Deutch; T Higashinakagawa; I B Dawid
Journal:  Proc Natl Acad Sci U S A       Date:  1974-07       Impact factor: 11.205

10.  Stimulation by cyclic adenosine monophosphate of plasmid deoxyribonucleic acid replication and catabolite repression of the plasmid deoxyribonucleic acid-protein relaxation complex.

Authors:  L Katz; D T Kingsbury; D R Helinski
Journal:  J Bacteriol       Date:  1973-05       Impact factor: 3.490

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  48 in total

Review 1.  Nucleolar dominance: uniparental gene silencing on a multi-megabase scale in genetic hybrids.

Authors:  C S Pikaard
Journal:  Plant Mol Biol       Date:  2000-06       Impact factor: 4.076

2.  RNA polymerase I transcription in a Brassica interspecific hybrid and its progenitors: Tests of transcription factor involvement in nucleolar dominance.

Authors:  M Frieman; Z J Chen; J Saez-Vasquez; L A Shen; C S Pikaard
Journal:  Genetics       Date:  1999-05       Impact factor: 4.562

3.  Length heterogeneity in ITS 2 and the methylation status of CCGG and GCGC sites in the rRNA genes of the genus Peronosclerospora.

Authors:  C Yao; R A Frederiksen; C W Magill
Journal:  Curr Genet       Date:  1992-11       Impact factor: 3.886

4.  Is higher-order structure conserved in eukaryotic ribosomal DNA intergenic spacers?

Authors:  G D Baldridge; M W Dalton; A M Fallon
Journal:  J Mol Evol       Date:  1992-12       Impact factor: 2.395

5.  Transcription and tyranny in the nucleolus: the organization, activation, dominance and repression of ribosomal RNA genes.

Authors:  Craig S Pikaard
Journal:  Arabidopsis Book       Date:  2002-08-12

6.  Nucleolar dominance and maternal control of 45S rDNA expression.

Authors:  Katarzyna Michalak; Sebastian Maciak; Young Bun Kim; Graciela Santopietro; Jung Hun Oh; Lin Kang; Harold R Garner; Pawel Michalak
Journal:  Proc Biol Sci       Date:  2015-12-07       Impact factor: 5.349

7.  Dropout alignment allows homology recognition and evolutionary analysis of rDNA intergenic spacers.

Authors:  Seongho Ryu; Yoonkyung Do; David H A Fitch; Won Kim; Bud Mishra
Journal:  J Mol Evol       Date:  2008-03-25       Impact factor: 2.395

8.  Ribosomal gene promoter domains can function as artificial enhancers of RNA polymerase I transcription, supporting a promoter origin for natural enhancers in Xenopus.

Authors:  C S Pikaard
Journal:  Proc Natl Acad Sci U S A       Date:  1994-01-18       Impact factor: 11.205

9.  Transcription in cloned spacers of Xenopus laevis ribosomal DNA.

Authors:  G T Morgan; R H Reeder; A H Bakken
Journal:  Proc Natl Acad Sci U S A       Date:  1983-11       Impact factor: 11.205

10.  The origin of the rRNA precursor from Xenopus borealis, analysed in vivo and in vitro.

Authors:  B McStay; A Bird
Journal:  Nucleic Acids Res       Date:  1983-12-10       Impact factor: 16.971

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