Literature DB >> 6264428

DNase I hypersensitive sites in Drosophila chromatin occur at the 5' ends of regions of transcription.

M A Keene, V Corces, K Lowenhaupt, S C Elgin.   

Abstract

By using a map of the unique region of DNA encoding the fur small heat-shock proteins of Drosophila melanogaster (hsp 22, hsp 23, hsp 26, and hsp 28), and a simple mapping technique, the positions of the DNase I hypersensitive sites of chromatin in the vicinity of these genes have now been determined. The major chromatin-specific sites occur at the 5' ends of each of the four heat-shock protein genes in embryo nuclei. These genes are not active in the nuclei analyzed but can be quickly induced in these cells by the heat-shock stimulus. The chromatin structure indicated by DNase I hypersensitivity may be a necessary factor in the general mechanism of gene activation.

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Year:  1981        PMID: 6264428      PMCID: PMC319007          DOI: 10.1073/pnas.78.1.143

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  15 in total

Review 1.  The induction of gene activity in drosophilia by heat shock.

Authors:  M Ashburner; J J Bonner
Journal:  Cell       Date:  1979-06       Impact factor: 41.582

2.  A stretch of "late" SV40 viral DNA about 400 bp long which includes the origin of replication is specifically exposed in SV40 minichromosomes.

Authors:  A J Varshavsky; O Sundin; M Bohn
Journal:  Cell       Date:  1979-02       Impact factor: 41.582

3.  Sites in simian virus 40 chromatin which are preferentially cleaved by endonucleases.

Authors:  W A Scott; D J Wigmore
Journal:  Cell       Date:  1978-12       Impact factor: 41.582

4.  Staphylococcal nuclease makes a single non-random cut in the simian virus 40 viral minichromosome.

Authors:  O Sundin; A Varshavsky
Journal:  J Mol Biol       Date:  1979-08-15       Impact factor: 5.469

5.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

6.  The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity.

Authors:  C Wu; Y C Wong; S C Elgin
Journal:  Cell       Date:  1979-04       Impact factor: 41.582

7.  The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence.

Authors:  C Wu; P M Bingham; K J Livak; R Holmgren; S C Elgin
Journal:  Cell       Date:  1979-04       Impact factor: 41.582

8.  Specific interaction of a purified transcription factor with an internal control region of 5S RNA genes.

Authors:  D R Engelke; S Y Ng; B S Shastry; R G Roeder
Journal:  Cell       Date:  1980-03       Impact factor: 41.582

9.  Four heat shock proteins of Drosophila melanogaster coded within a 12-kilobase region in chromosome subdivision 67B.

Authors:  V Corces; R Holmgren; R Freund; R Morimoto; M Meselson
Journal:  Proc Natl Acad Sci U S A       Date:  1980-09       Impact factor: 11.205

10.  DNA methylation: correlation with DNase I sensitivity of chicken ovalbumin and conalbumin chromatin.

Authors:  M T Kuo; J L Mandel; P Chambon
Journal:  Nucleic Acids Res       Date:  1979-12-20       Impact factor: 16.971

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  90 in total

Review 1.  Coupling polymerase pausing and chromatin landscapes for precise regulation of transcription.

Authors:  Daniel A Gilchrist; Karen Adelman
Journal:  Biochim Biophys Acta       Date:  2012-03-02

2.  Epigenetic priors for identifying active transcription factor binding sites.

Authors:  Gabriel Cuellar-Partida; Fabian A Buske; Robert C McLeay; Tom Whitington; William Stafford Noble; Timothy L Bailey
Journal:  Bioinformatics       Date:  2011-11-08       Impact factor: 6.937

3.  Using formaldehyde-assisted isolation of regulatory elements (FAIRE) to isolate active regulatory DNA.

Authors:  Jeremy M Simon; Paul G Giresi; Ian J Davis; Jason D Lieb
Journal:  Nat Protoc       Date:  2012-01-19       Impact factor: 13.491

4.  Replication-independent core histone dynamics at transcriptionally active loci in vivo.

Authors:  Christophe Thiriet; Jeffrey J Hayes
Journal:  Genes Dev       Date:  2005-03-15       Impact factor: 11.361

5.  Sequences involved in temperature and ecdysterone-induced transcription are located in separate regions of a Drosophila melanogaster heat shock gene.

Authors:  E Hoffman; V Corces
Journal:  Mol Cell Biol       Date:  1986-02       Impact factor: 4.272

6.  High-resolution mapping and characterization of open chromatin across the genome.

Authors:  Alan P Boyle; Sean Davis; Hennady P Shulha; Paul Meltzer; Elliott H Margulies; Zhiping Weng; Terrence S Furey; Gregory E Crawford
Journal:  Cell       Date:  2008-01-25       Impact factor: 41.582

7.  Chromatin conformational changes accompany transcriptional activation of a glucose-repressed gene in Saccharomyces cerevisiae.

Authors:  A Sledziewski; E T Young
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

8.  High-resolution mapping of DNase I-hypersensitive sites of Drosophila heat shock genes in Drosophila melanogaster and Saccharomyces cerevisiae.

Authors:  N Costlow; J T Lis
Journal:  Mol Cell Biol       Date:  1984-09       Impact factor: 4.272

9.  DNase I sensitivity of integrated simian virus 40 DNA.

Authors:  G Blanck; S Chen; R Pollack
Journal:  Mol Cell Biol       Date:  1984-03       Impact factor: 4.272

10.  Chromatin regions, released by endogenous nucleases, are enriched in immunogenic tissue-specific proteins.

Authors:  V M Ermekova; O S Melkonyan; R N Zotova; L F Nazarova; S R Umansky
Journal:  Mol Biol Rep       Date:  1984-01       Impact factor: 2.316

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