Literature DB >> 6261793

Thermodynamics of (dG--dC)3 double-helix formation in water and deuterium oxide.

D D Albergo, L A Marky, K J Breslauer, D H Turner.   

Abstract

The thermodynamics of double-helix formation by (dG-dC)3 in H2O and D2O were measured spectrophotometrically and calorimetrically. Spectrophotometric values based on plots of inverse melting temperature vs. log of concentration are in good agreement with calorimetry. However, spectrophotometric values based on the shape of absorbance vs. temperature curves are in good agreement with calorimetry only if linear pre- and posttransition base lines are subtracted before analysis. The averages of the enthalpies measured by the three most reliable spectroscopic methods are -56.9 and -62.7 kcal/mol of helix in H2O and D2O, respectively. The corresponding calorimetric values are -59.6 and -65.8 kcal/mol of helix.

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Year:  1981        PMID: 6261793     DOI: 10.1021/bi00509a001

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  35 in total

1.  Transition characteristics and thermodynamic analysis of DNA duplex formation: a quantitative consideration for the extent of duplex association.

Authors:  P Wu; N Sugimoto
Journal:  Nucleic Acids Res       Date:  2000-12-01       Impact factor: 16.971

2.  Study by (23)Na-NMR, (1)H-NMR, and ultraviolet spectroscopy of the thermal stability of an 11-basepair oligonucleotide.

Authors:  P Cahen; M Luhmer; C Fontaine; C Morat; J Reisse; K Bartik
Journal:  Biophys J       Date:  2000-02       Impact factor: 4.033

3.  Prediction of hybridization and melting for double-stranded nucleic acids.

Authors:  Roumen A Dimitrov; Michael Zuker
Journal:  Biophys J       Date:  2004-07       Impact factor: 4.033

4.  Hairpin and parallel quartet structures for telomeric sequences.

Authors:  P Balagurumoorthy; S K Brahmachari; D Mohanty; M Bansal; V Sasisekharan
Journal:  Nucleic Acids Res       Date:  1992-08-11       Impact factor: 16.971

5.  Thermodynamics of triple helix formation: spectrophotometric studies on the d(A)10.2d(T)10 and d(C+3T4C+3).d(G3A4G3).d(C3T4C3) triple helices.

Authors:  D S Pilch; R Brousseau; R H Shafer
Journal:  Nucleic Acids Res       Date:  1990-10-11       Impact factor: 16.971

6.  Circular dichroism studies of an oligodeoxyribonucleotide containing a hairpin loop made of a hexaethylene glycol chain: conformation and stability.

Authors:  M Durand; K Chevrie; M Chassignol; N T Thuong; J C Maurizot
Journal:  Nucleic Acids Res       Date:  1990-11-11       Impact factor: 16.971

7.  G/C-modified oligodeoxynucleotides with selective complementarity: synthesis and hybridization properties.

Authors:  J Woo; R B Meyer; H B Gamper
Journal:  Nucleic Acids Res       Date:  1996-07-01       Impact factor: 16.971

Review 8.  Heat capacity changes associated with nucleic acid folding.

Authors:  Peter J Mikulecky; Andrew L Feig
Journal:  Biopolymers       Date:  2006-05       Impact factor: 2.505

9.  Bifacial nucleoside as a surrogate for both T and A in duplex DNA.

Authors:  Dongwon Shin; Yitzhak Tor
Journal:  J Am Chem Soc       Date:  2011-04-15       Impact factor: 15.419

10.  Quantifying the temperature dependence of glycine-betaine RNA duplex destabilization.

Authors:  Jeffrey J Schwinefus; Ryan J Menssen; James M Kohler; Elliot C Schmidt; Alexandra L Thomas
Journal:  Biochemistry       Date:  2013-11-22       Impact factor: 3.162

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