Literature DB >> 6236845

Acceleration of the NAD cyanide adduct reaction by lactate dehydrogenase: the equilibrium binding effect as a measure of the activation of bound NAD.

J W Burgner, W J Ray.   

Abstract

The binary complex of NAD and lactate dehydrogenase reacts reversibly with cyanide to produce a complex (E X NAD-CN) whose noncovalent interactions are similar to those in the E X NADH complex (where E is one-fourth of the tetrameric dehydrogenase). The reaction apparently is a simple bimolecular nucleophilic addition at the 4 position of the bound nicotinamide ring; viz., cyanide does not bind to the enzyme prior to reaction. The value of the dissociation constant for E X NAD-CN is about 1 X 10(-6) M and is independent of pH over the range of 6-8. The equilibrium constant for the reaction of cyanide with E X NAD is about 400-fold larger than that for the nonenzymic process after a statistical correction. This increment in Ke is accounted for by a 220-fold increase in the rate of the forward enzymic reaction (20 M-1 s-1) as compared with an approximately 2-fold decrease for the reverse process (9 X 10(-5) s-1). Thus, the increased value of the rate constant for bond formation in the enzymic reaction is attributed to an equilibrium binding effect that is translated almost entirely into a rate effect on that step (bond formation). Since the nonenzymic reaction is sensitive to solvent composition, this equilibrium binding effect likely is produced by environmental effects at the nicotinamide/dehydronicotinamide part of the coenzyme binding site on the enzyme.

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Year:  1984        PMID: 6236845     DOI: 10.1021/bi00311a008

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  10 in total

1.  The approach to the Michaelis complex in lactate dehydrogenase: the substrate binding pathway.

Authors:  Sebastian McClendon; Nick Zhadin; Robert Callender
Journal:  Biophys J       Date:  2005-06-24       Impact factor: 4.033

2.  On the pathway of forming enzymatically productive ligand-protein complexes in lactate dehydrogenase.

Authors:  Hua Deng; Scott Brewer; Dung M Vu; Keith Clinch; Robert Callender; R Brian Dyer
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

3.  Evolution of a transition state: role of Lys100 in the active site of isocitrate dehydrogenase.

Authors:  Stephen P Miller; Susana Gonçalves; Pedro M Matias; Antony M Dean
Journal:  Chembiochem       Date:  2014-05-02       Impact factor: 3.164

Review 4.  Regeneration of nicotinamide cofactors for use in organic synthesis.

Authors:  H K Chenault; G M Whitesides
Journal:  Appl Biochem Biotechnol       Date:  1987-03       Impact factor: 2.926

5.  Kinetic analysis of lactate dehydrogenase using integrated rate equations.

Authors:  L D Holmes; M R Schiller; E A Boeker
Journal:  Experientia       Date:  1993-10-15

6.  Effect of osmolytes on protein dynamics in the lactate dehydrogenase-catalyzed reaction.

Authors:  Nickolay Zhadin; Robert Callender
Journal:  Biochemistry       Date:  2011-02-09       Impact factor: 3.162

7.  Molecular properties of pyruvate bound to lactate dehydrogenase: a Raman spectroscopic study.

Authors:  H Deng; J Zheng; J Burgner; R Callender
Journal:  Proc Natl Acad Sci U S A       Date:  1989-06       Impact factor: 11.205

8.  Probing the role of dynamics in hydride transfer catalyzed by lactate dehydrogenase.

Authors:  Nickolay Zhadin; Miriam Gulotta; Robert Callender
Journal:  Biophys J       Date:  2008-05-16       Impact factor: 4.033

9.  Mechanistic implications of the cysteine-nicotinamide adduct in aldehyde dehydrogenase based on quantum mechanical/molecular mechanical simulations.

Authors:  Troy Wymore; David W Deerfield; John Hempel
Journal:  Biochemistry       Date:  2007-07-27       Impact factor: 3.162

10.  Energy landscape of the Michaelis complex of lactate dehydrogenase: relationship to catalytic mechanism.

Authors:  Huo-Lei Peng; Hua Deng; R Brian Dyer; Robert Callender
Journal:  Biochemistry       Date:  2014-03-11       Impact factor: 3.162

  10 in total

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