Literature DB >> 6204759

Nucleotide sequence-directed mapping of the nucleosomes of SV40 chromatin.

G Mengeritsky, E N Trifonov.   

Abstract

In our previous work we have shown by comparison of experimental and computational data that the positions of the histone octamers bound to the DNA molecule appear to be completely sequence-dependent. This provides a convenient and quick method for locating the nucleosomes along the DNA molecule, as soon as the nucleotide sequence is known. Using this computational approach, the complete nucleosomal map of the SV40 minichromosome has been constructed. The map consists of 25 nucleosomes, with their coordinates (centers) being specified with high accuracy. The map is found to be in remarkable agreement with available experimental data.

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Year:  1984        PMID： 6204759     DOI： 10.1007/BF02788576

Source DB:  PubMed          Journal:  Cell Biophys        ISSN： 0163-4992


  23 in total

1.  Replication and structure of simian virus 40 chromosomes.

Authors:  M L DePamphilis; S Anderson; R Bar-Shavit; E Collins; H Edenberg; T Herman; B Karas; G Kaufmann; H Krokan; E Shelton; R Su; D Tapper; P M Wassarman
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1979

2.  The arrangement of nucleosomes in nucleoprotein complexes from polyoma virus and SV40.

Authors:  B A Ponder; L V Crawford
Journal:  Cell       Date:  1977-05       Impact factor: 41.582

3.  The genome of simian virus 40.

Authors:  V B Reddy; B Thimmappaya; R Dhar; K N Subramanian; B S Zain; J Pan; P K Ghosh; M L Celma; S M Weissman
Journal:  Science       Date:  1978-05-05       Impact factor: 47.728

4.  Complete nucleotide sequence of SV40 DNA.

Authors:  W Fiers; R Contreras; G Haegemann; R Rogiers; A Van de Voorde; H Van Heuverswyn; J Van Herreweghe; G Volckaert; M Ysebaert
Journal:  Nature       Date:  1978-05-11       Impact factor: 49.962

5.  Late messenger RNA production by viable simian virus 40 mutants with deletions in the leader region.

Authors:  M Piatak; K N Subramanian; P Roy; S M Weissman
Journal:  J Mol Biol       Date:  1981-12-15       Impact factor: 5.469

Review 6.  Chromatin structure and gene activity: the role of nonhistone chromosomal proteins.

Authors:  I L Cartwright; S M Abmayr; G Fleischmann; K Lowenhaupt; S C Elgin; M A Keene; G C Howard
Journal:  CRC Crit Rev Biochem       Date:  1982

7.  Absence of nucleosomes in a fraction of SV40 chromatin between the origin of replication and the region coding for the late leader RNA.

Authors:  S Saragosti; G Moyne; M Yaniv
Journal:  Cell       Date:  1980-05       Impact factor: 41.582

8.  Specificity of initiation of transcription of simian virus 40 DNA I by Escherichia coli RNA polymerase: identification and localization of five sites for initiation with [gamma-32P]ATP.

Authors:  P Lebowitz; R Stern; P K Ghosh; S M Weissman
Journal:  J Virol       Date:  1977-05       Impact factor: 5.103

9.  Interaction of Simian Virus 40 chromatin with Simian Virus 40 T-antigen.

Authors:  M Persico-DiLauro; R G Martin; D M Livingston
Journal:  J Virol       Date:  1977-11       Impact factor: 5.103

10.  Localization of the binding sites of prokaryotic and eukaryotic RNA polymerases on simian virus 40 DNA.

Authors:  S Saragosti; O Croissant; M Yaniv
Journal:  Eur J Biochem       Date:  1980-05
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  5 in total

1.  Mapping in vivo topoisomerase I sites on simian virus 40 DNA: asymmetric distribution of sites on replicating molecules.

Authors:  S E Porter; J J Champoux
Journal:  Mol Cell Biol       Date:  1989-02       Impact factor: 4.272

2.  The SV40 termination region exhibits an altered helical DNA conformation.

Authors:  L G Poljak; J D Gralla
Journal:  Nucleic Acids Res       Date:  1987-07-10       Impact factor: 16.971

Review 3.  Molecular biology, epidemiology, and pathogenesis of progressive multifocal leukoencephalopathy, the JC virus-induced demyelinating disease of the human brain.

Authors:  Michael W Ferenczy; Leslie J Marshall; Christian D S Nelson; Walter J Atwood; Avindra Nath; Kamel Khalili; Eugene O Major
Journal:  Clin Microbiol Rev       Date:  2012-07       Impact factor: 26.132

4.  Simian virus 40 replication pause sites map with the nucleosomes.

Authors:  E N Trifonov; G Mengeritsky
Journal:  J Virol       Date:  1984-12       Impact factor: 5.103

5.  Sequence signatures of nucleosome positioning in Caenorhabditis elegans.

Authors:  Kaifu Chen; Lei Wang; Meng Yang; Jiucheng Liu; Chengqi Xin; Songnian Hu; Jun Yu
Journal:  Genomics Proteomics Bioinformatics       Date:  2010-06       Impact factor: 7.691
  5 in total

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