Literature DB >> 6188502

Ion movement through gramicidin A channels. Studies on the diffusion-controlled association step.

O S Andersen.   

Abstract

The permeability characteristics of gramicidin A channels are generally considered to reflect accurately the intrinsic properties of the channels themselves; i.e., the aqueous convergence regions are assumed to be negligible barriers for ion movement through the channels. The validity of this assumption has been examined by an analysis of gramicidin A single-channel current-voltage characteristics up to very high potentials (500 mV). At low permeant ion concentrations the currents approach a voltage-independent limiting value, whose magnitude is proportional to the permeant ion concentration. The magnitude of this current is decreased by experimental maneuvers that decrease the aqueous diffusion coefficient of the ions. It is concluded that the magnitude of this limiting current is determined by the diffusive ion movement through the aqueous convergence regions up to the channel entrance. It is further shown that the small-signal (ohmic) permeability properties also reflect the existence of the aqueous diffusion limitation. These results have considerable consequences for the construction of kinetic models for ion movement through gramicidin A channels. It is shown that the simple two-site-three-barrier model commonly used to interpret gramicidin A permeability data may lead to erroneous conclusions, as biionic potentials will be concentration dependent even when the channel is occupied by at most one ion. The aqueous diffusion limitation must be considered explicitly in the analysis of gramicidin A permeability characteristics. Some implications for understanding the properties of ion-conducting channels in biological membranes will be considered.

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Year:  1983        PMID: 6188502      PMCID: PMC1329163          DOI: 10.1016/S0006-3495(83)84416-6

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

1.  The receptor for tetrodotoxin and saxitoxin. A structural hypothesis.

Authors:  B Hille
Journal:  Biophys J       Date:  1975-06       Impact factor: 4.033

2.  Nonsolvent water in liposomes.

Authors:  Y Katz; J M Diamond
Journal:  J Membr Biol       Date:  1974       Impact factor: 1.843

3.  The kinetics of ion movements in the gramicidin channel.

Authors:  B W Urban; S B Hladky; D A Haydon
Journal:  Fed Proc       Date:  1978-10

4.  A study of gramicidin using deuterium oxide.

Authors:  R H Tredgold; R Jones
Journal:  Biochim Biophys Acta       Date:  1979-02-02

5.  Ion movement through gramicidin A channels. Single-channel measurements at very high potentials.

Authors:  O S Andersen
Journal:  Biophys J       Date:  1983-02       Impact factor: 4.033

6.  Immobilisation of gating charge by a substance that simulates inactivation.

Authors:  J Z Yeh; C M Armstrong
Journal:  Nature       Date:  1978-06-01       Impact factor: 49.962

7.  Viscosity-dependent structural fluctuations in enzyme catalysis.

Authors:  B Gavish; M M Werber
Journal:  Biochemistry       Date:  1979-04-03       Impact factor: 3.162

8.  Rate theory calculation of gramicidin single-channel currents using NMR-derived rate constants.

Authors:  D W Urry; C M Venkatachalam; A Spisni; P Läuger; M A Khaled
Journal:  Proc Natl Acad Sci U S A       Date:  1980-04       Impact factor: 11.205

9.  The permeability of the sodium channel to organic cations in myelinated nerve.

Authors:  B Hille
Journal:  J Gen Physiol       Date:  1971-12       Impact factor: 4.086

10.  Potassium channels in myelinated nerve. Selective permeability to small cations.

Authors:  B Hille
Journal:  J Gen Physiol       Date:  1973-06       Impact factor: 4.086

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  71 in total

1.  Proton mobilities in water and in different stereoisomers of covalently linked gramicidin A channels.

Authors:  S Cukierman
Journal:  Biophys J       Date:  2000-04       Impact factor: 4.033

2.  Membrane dipole potential modulates proton conductance through gramicidin channel: movement of negative ionic defects inside the channel.

Authors:  Tatyana I Rokitskaya; Elena A Kotova; Yuri N Antonenko
Journal:  Biophys J       Date:  2002-02       Impact factor: 4.033

3.  Model channel ion currents in NaCl-extended simple point charge water solution with applied-field molecular dynamics.

Authors:  P S Crozier; D Henderson; R L Rowley; D D Busath
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

4.  Low dielectric permittivity of water at the membrane interface: effect on the energy coupling mechanism in biological membranes.

Authors:  Dmitry A Cherepanov; Boris A Feniouk; Wolfgang Junge; Armen Y Mulkidjanian
Journal:  Biophys J       Date:  2003-08       Impact factor: 4.033

5.  Amino acid substitutions and ion channel function. Model-dependent conclusions.

Authors:  M D Becker; R E Koeppe; O S Andersen
Journal:  Biophys J       Date:  1992-04       Impact factor: 4.033

6.  Noncontact dipole effects on channel permeation. VI. 5F- and 6F-Trp gramicidin channel currents.

Authors:  Chad D Cole; Adam S Frost; Nephi Thompson; Myriam Cotten; Timothy A Cross; David D Busath
Journal:  Biophys J       Date:  2002-10       Impact factor: 4.033

Review 7.  Constant electric field simulations of the membrane potential illustrated with simple systems.

Authors:  James Gumbart; Fatemeh Khalili-Araghi; Marcos Sotomayor; Benoît Roux
Journal:  Biochim Biophys Acta       Date:  2011-10-05

8.  Ion permeation through a narrow channel: using gramicidin to ascertain all-atom molecular dynamics potential of mean force methodology and biomolecular force fields.

Authors:  Toby W Allen; Olaf S Andersen; Benoit Roux
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

9.  Calculation of deformation energies and conformations in lipid membranes containing gramicidin channels.

Authors:  P Helfrich; E Jakobsson
Journal:  Biophys J       Date:  1990-05       Impact factor: 4.033

10.  Modeling the gramicidin channel: interpretation of experimental data using rate theory.

Authors:  G Eisenman; J P Sandblom
Journal:  Biophys J       Date:  1984-01       Impact factor: 4.033

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