Literature DB >> 6165586

Structural interpretation of vicinal proton-proton coupling constants 3JH alpha H beta in the basic pancreatic trypsin inhibitor measured by two-dimensional J-resolved NMR spectroscopy.

K Nagayama, K Wüthrich.   

Abstract

Two-dimensional J-resolved 1H NMR spectroscopy was used to measure the vicinal spin-spin coupling constants 3JH alpha H beta for numerous, previously individually assigned amino acid residues in the basic pancreatic trypsin inhibitor at various temperatures between 30 and 85 degrees JC. An analysis of this data is proposed which enables one to compare the spatial arrangements of individual amino acid side chains in solution and in single crystals of the protein, and which also provides information on the mobility of the side chains in the solution conformation. As a rule, the amino acid side chains in the interior of the protein were found to be locked into unique spatial orientations, with the mobility restricted to rapid rotational fluctuations about this unique value for the dihedral angle chi 1. In most, but not all, instances the data for the interior amino acids indicate identical average conformations for the amino acid side chains in single crystals and in solution. For residues on the protein surface structural rearrangements between crystal and solution appear to be common, and the mobility in the solution conformation may include rapid averaging between two or several distinct, preferentially populated values of chi 1, analogous to the gauche-trans-gauche isomerization in isolated amino acids.

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Year:  1981        PMID: 6165586     DOI: 10.1111/j.1432-1033.1981.tb06252.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  6 in total

1.  Solution structures of the C-terminal headpiece subdomains of human villin and advillin, evaluation of headpiece F-actin-binding requirements.

Authors:  Wim Vermeulen; Peter Vanhaesebrouck; Marleen Van Troys; Mieke Verschueren; Franky Fant; Marc Goethals; Christophe Ampe; José C Martins; Frans A M Borremans
Journal:  Protein Sci       Date:  2004-05       Impact factor: 6.725

2.  Conformational analysis of PKI(5-22)amide, the active inhibitory fragment of the inhibitor protein of the cyclic AMP-dependent protein kinase.

Authors:  J Reed; J S De Ropp; J Trewhella; D B Glass; W K Liddle; E M Bradbury; V Kinzel; D A Walsh
Journal:  Biochem J       Date:  1989-12-01       Impact factor: 3.857

3.  Quantitative residue-specific protein backbone torsion angle dynamics from concerted measurement of 3J couplings.

Authors:  Jung Ho Lee; Fang Li; Alexander Grishaev; Ad Bax
Journal:  J Am Chem Soc       Date:  2015-01-23       Impact factor: 15.419

4.  Precise vicinal coupling constants 3JHN alpha in proteins from nonlinear fits of J-modulated [15N,1H]-COSY experiments.

Authors:  M Billeter; D Neri; G Otting; Y Q Qian; K Wüthrich
Journal:  J Biomol NMR       Date:  1992-05       Impact factor: 2.835

5.  The des(1-6)antennapedia homeodomain: comparison of the NMR solution structure and the DNA-binding affinity with the intact Antennapedia homeodomain.

Authors:  Y Q Qian; D Resendez-Perez; W J Gehring; K Wüthrich
Journal:  Proc Natl Acad Sci U S A       Date:  1994-04-26       Impact factor: 11.205

6.  A novel detection scheme for high-resolution two-dimensional spin-echo correlated spectra in inhomogeneous fields.

Authors:  Yuqing Huang; Zhiyong Zhang; Shuhui Cai; Zhong Chen
Journal:  PLoS One       Date:  2014-01-02       Impact factor: 3.240

  6 in total

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