Literature DB >> 6159589

Polypurine DNAs and RNAs form secondary structures which may be tetra-stranded.

J S Lee, D H Evans, A R Morgan.   

Abstract

Polypurine DNAs and RNAs containing at least 33% guanine form a stable secondary structure at neutral pH and moderate ionic strengths. The tm's of the polymers increase with increasing guanine content. To eliminate possible structures three novel polymers, d(Gn2A)n, d(Gm6A)n and d(IA)n, as well as the random copolymer rr(G,A)n were were studied. Both d(Gn2A)n and d(IA)n can form a secondary structure whereas d(Gm6A)n and r(G,A)n cannot. Model building suggested two possible structures, one a duplex and the other a tetra-stranded polymer. The latter is considered to be the more likely, since previous X-ray diffraction studies have shown that rGn and rIn are tetra-stranded. Circular dichroism spectra are also consistent with such an interpretation.

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Year:  1980        PMID: 6159589      PMCID: PMC324236          DOI: 10.1093/nar/8.18.4305

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  28 in total

1.  Nucleotide sequence analysis of deoxyribonucleic acid. VII. Characterization of Escherichia coli exonuclease 3 activity for possible use in terminal nucleotide sequence analysis of duplex deoxyribonucleic acid.

Authors:  J E Donelson; R Wu
Journal:  J Biol Chem       Date:  1972-07-25       Impact factor: 5.157

2.  Hydrogen exchange study of some polynucleotides and transfer RNA.

Authors:  J J Englander; N R Kallenbach; S W Englander
Journal:  J Mol Biol       Date:  1972-01-14       Impact factor: 5.469

3.  Enzymatic synthesis of deoxyribonucleic acid. XXVI. Physical and chemical studies of a homogeneous deoxyribonucleic acid polymerase.

Authors:  T M Jovin; P T Englund; L L Bertsch
Journal:  J Biol Chem       Date:  1969-06-10       Impact factor: 5.157

4.  Oligonucleotide interactions. 3. Circular dichroism studies of the conformation of deoxyoligonucleotides.

Authors:  C R Cantor; M M Warshaw; H Shapiro
Journal:  Biopolymers       Date:  1970       Impact factor: 2.505

5.  Micrococcus luteus deoxyribonucleic acid polymerase. Studies on the initiation of deoxyribonucleic acid synthesis in vitro.

Authors:  S J Harwood; R D Wells
Journal:  J Biol Chem       Date:  1970-11-10       Impact factor: 5.157

6.  Physicochemical studies on polydeoxyribonucleotides containing defined repeating nucleotide sequences.

Authors:  R D Wells; J E Larson; R C Grant; B E Shortle; C R Cantor
Journal:  J Mol Biol       Date:  1970-12-28       Impact factor: 5.469

7.  Protonated polynucleotide structures. IX. Disproportionation of poly (G)-poly (C) in acid medium.

Authors:  D Thiele; W Guschlbauer
Journal:  Biopolymers       Date:  1971       Impact factor: 2.505

8.  Specificity of the three-stranded complex formation between double-stranded DNA and single-stranded RNA containing repeating nucleotide sequences.

Authors:  A R Morgan; R D Wells
Journal:  J Mol Biol       Date:  1968-10-14       Impact factor: 5.469

9.  Adenylate oligomers in single- and double-strand conformation.

Authors:  J Brahms; A M Michelson; K E Van Holde
Journal:  J Mol Biol       Date:  1966-02       Impact factor: 5.469

10.  Physical and chemical characterization of two- and three-stranded adenine-thymine and adenine-uracil homopolymer complexes.

Authors:  M Riley; B Maling
Journal:  J Mol Biol       Date:  1966-09       Impact factor: 5.469

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  17 in total

1.  Sequences downstream of the 5' splice donor site are required for both packaging and dimerization of human immunodeficiency virus type 1 RNA.

Authors:  Rodney S Russell; Jing Hu; Véronique Bériault; Andrew J Mouland; Michael Laughrea; Lawrence Kleiman; Mark A Wainberg; Chen Liang
Journal:  J Virol       Date:  2003-01       Impact factor: 5.103

2.  The stability of polypurine tetraplexes in the presence of mono- and divalent cations.

Authors:  J S Lee
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

3.  CD of six different conformational rearrangements of poly[d(A-G).d(C-T)] induced by low pH.

Authors:  V P Antao; D M Gray; R L Ratliff
Journal:  Nucleic Acids Res       Date:  1988-01-25       Impact factor: 16.971

4.  DNA homoduplexes containing no pyrimidine nucleotide.

Authors:  Jaroslav Kypr; Iva Kejnovská; Michaela Vorlícková
Journal:  Eur Biophys J       Date:  2003-03-20       Impact factor: 1.733

5.  Characterization of imperfect DNA duplexes containing unpaired bases and non-Watson-Crick base pairs.

Authors:  D H Evans; A R Morgan
Journal:  Nucleic Acids Res       Date:  1986-05-27       Impact factor: 16.971

6.  Characterization of a multisubunit human protein which selectively binds single stranded d(GA)n and d(GT)n sequence repeats in DNA.

Authors:  A Aharoni; N Baran; H Manor
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

7.  Dynamics and relative stabilities of parallel- and antiparallel-stranded DNA duplexes.

Authors:  A E Garcia; D M Soumpasis; T M Jovin
Journal:  Biophys J       Date:  1994-06       Impact factor: 4.033

8.  Formation of a parallel-stranded DNA homoduplex by d(GGA) repeat oligonucleotides.

Authors:  T Suda; Y Mishima; H Asakura; R Kominami
Journal:  Nucleic Acids Res       Date:  1995-09-25       Impact factor: 16.971

9.  Monoclonal antibodies showing sequence specificity in their interaction with single-stranded DNAs.

Authors:  J S Lee; J R Lewis; A R Morgan; T R Mosmann; B Singh
Journal:  Nucleic Acids Res       Date:  1981-04-10       Impact factor: 16.971

10.  Single-stranded nucleic acid helical secondary structure stabilized by ionic bonds: d(A(+)-G)10.

Authors:  N G Dolinnaya; J R Fresco
Journal:  Proc Natl Acad Sci U S A       Date:  1992-10-01       Impact factor: 11.205

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