Literature DB >> 6095186

S1-hypersensitive sites in eukaryotic promoter regions.

T Evans, E Schon, G Gora-Maslak, J Patterson, A Efstratiadis.   

Abstract

We have examined by fine mapping the S1 nuclease-hypersensitivity of the 5' flanking regions of the human beta-globin and rat preproinsulin II genes and of the SV40 origin/enhancer region. In all cases S1-hypersensitive sites are located in known or presumed promoter/regulatory regions. Though a consensus DNA sequence is not evident, all of these sites reside in predominantly homopurine-homopyrimidine stretches. The alternate (non-B) DNA structure which is revealed by the enzymatic probe is a sequence-dependent feature of a short stretch of DNA, which is retained upon transplantation into a foreign environment. The alternate structure exhibits S1-nicking patterns uniquely different from those associated with the presence of Z-DNA.

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Year:  1984        PMID： 6095186      PMCID： PMC320272          DOI： 10.1093/nar/12.21.8043

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  32 in total

1.  Complete nucleotide sequence of the Escherichia coli plasmid pBR322.

Authors:  J G Sutcliffe
Journal:  Cold Spring Harb Symp Quant Biol       Date:  1979

2.  Initiation of SV40 DNA replication in vivo: location and structure of 5' ends of DNA synthesized in the ori region.

Authors:  R T Hay; M L DePamphilis
Journal:  Cell       Date:  1982-04       Impact factor: 41.582

3.  Homocopolymer sequences in the spacer of a sea urchin histone gene repeat are sensitive to S1 nuclease.

Authors:  C C Hentschel
Journal:  Nature       Date:  1982-02-25       Impact factor: 49.962

4.  A 200 base pair region at the 5' end of the chicken adult beta-globin gene is accessible to nuclease digestion.

Authors:  J D McGhee; W I Wood; M Dolan; J D Engel; G Felsenfeld
Journal:  Cell       Date:  1981-11       Impact factor: 41.582

5.  T antigen binding and the control of SV40 gene expression.

Authors:  R Tjian
Journal:  Cell       Date:  1981-10       Impact factor: 41.582

Review 6.  DNA supercoiling: another level for regulating gene expression.

Authors:  G R Smith
Journal:  Cell       Date:  1981-06       Impact factor: 41.582

7.  Left-handed Z-DNA is induced by supercoiling in physiological ionic conditions.

Authors:  C K Singleton; J Klysik; S M Stirdivant; R D Wells
Journal:  Nature       Date:  1982-09-23       Impact factor: 49.962

8.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

9.  DNA structure and gene regulation.

Authors:  R D Wells; T C Goodman; W Hillen; G T Horn; R D Klein; J E Larson; U R Müller; S K Neuendorf; N Panayotatos; S M Stirdivant
Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1980

10.  The structure and evolution of the two nonallelic rat preproinsulin genes.

Authors:  P Lomedico; N Rosenthal; A Efstratidadis; W Gilbert; R Kolodner; R Tizard
Journal:  Cell       Date:  1979-10       Impact factor: 41.582
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  52 in total

1.  Quadruplex structure of d(G3T4G3) stabilized by K+ or Na+ is an asymmetric hairpin dimer.

Authors:  P V Scaria; S J Shire; R H Shafer
Journal:  Proc Natl Acad Sci U S A       Date:  1992-11-01       Impact factor: 11.205

2.  Phosphorylation at 5' end of guanosine stretches inhibits dimerization of G-quadruplexes and formation of a G-quadruplex interferes with the enzymatic activities of DNA enzymes.

Authors:  M Khabir Uddin; Yoshio Kato; Yasuomi Takagi; Toshiyasu Mikuma; Kazunari Taira
Journal:  Nucleic Acids Res       Date:  2004-08-27       Impact factor: 16.971

3.  Thermodynamics and structure of a DNA tetraplex: a spectroscopic and calorimetric study of the tetramolecular complexes of d(TG3T) and d(TG3T2G3T).

Authors:  R Jin; B L Gaffney; C Wang; R A Jones; K J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  1992-09-15       Impact factor: 11.205

4.  Complex structural behavior of oligopurine-oligopyrimidine sequence cloned within the supercoiled plasmid.

Authors:  P Parniewski; G Galazka; A Wilk; J Klysik
Journal:  Nucleic Acids Res       Date:  1989-01-25       Impact factor: 16.971

5.  Unusual DNA structure in the regulatory region of the human papovavirus JC virus.

Authors:  S Amirhaeri; F Wohlrab; E O Major; R D Wells
Journal:  J Virol       Date:  1988-03       Impact factor: 5.103

6.  DNA synthesis arrest sites at the right terminus of rat long interspersed repeated (LINE or L1Rn) DNA family members.

Authors:  E d'Ambrosio; A V Furano
Journal:  Nucleic Acids Res       Date:  1987-04-10       Impact factor: 16.971

7.  Purification, characterization and molecular cloning of TGP1, a novel G-DNA binding protein from Tetrahymena thermophila.

Authors:  Q Lu; T Schierer; S G Kang; E Henderson
Journal:  Nucleic Acids Res       Date:  1998-04-01       Impact factor: 16.971

8.  The SV40 large T-antigen helicase can unwind four stranded DNA structures linked by G-quartets.

Authors:  N Baran; L Pucshansky; Y Marco; S Benjamin; H Manor
Journal:  Nucleic Acids Res       Date:  1997-01-15       Impact factor: 16.971

9.  Energetics of the B-H transition in supercoiled DNA carrying d(CT)x.d(AG)x and d(C)n.d(G)n inserts.

Authors:  V I Lyamichev; S M Mirkin; V P Kumarev; L V Baranova; A V Vologodskii; M D Frank-Kamenetskii
Journal:  Nucleic Acids Res       Date:  1989-11-25       Impact factor: 16.971

10.  Cloning of two novel forms of human acidic fibroblast growth factor (aFGF) mRNA.

Authors:  R A Payson; H Canatan; M A Chotani; W P Wang; S E Harris; R L Myers; I M Chiu
Journal:  Nucleic Acids Res       Date:  1993-02-11       Impact factor: 16.971
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