Literature DB >> 467445

Distribution of polypyrimidine . polypurine segments in DNA from diverse organisms.

H C Birnboim, R R Sederoff, M C Paterson.   

Abstract

Polypyrimidine . polypurine segments are regions of duplex DNA which contain a highly asymmetric distribution of pyrimidine and purine nucleotides. A polypyrimidine in single-stranded DNA can be detected by its ability to form a complex and poly(A, G) which will bind to hydroxyapatite. We tested DNA from a variety of organisms and found that most contained polypyrimidines. From the shape of the curve relating DNA size to percentage bound to hydroxyapatite, we conclude that polypyrimidine . polypurine segments occur widely in DNA from higher organisms, at intervals of 6000--8000 base pairs throughout the majority of the genome. Lower levels occur in DNA from yeast and Drosophila.

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Year:  1979        PMID: 467445     DOI: 10.1111/j.1432-1033.1979.tb13189.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  23 in total

1.  d(GA x TC)(n) microsatellite DNA sequences enhance homologous DNA recombination in SV40 minichromosomes.

Authors:  A Benet; G Mollà; F Azorín
Journal:  Nucleic Acids Res       Date:  2000-12-01       Impact factor: 16.971

2.  Triplex DNA in the nucleus: direct binding of triplex-specific antibodies and their effect on transcription, replication and cell growth.

Authors:  Y M Agazie; G D Burkholder; J S Lee
Journal:  Biochem J       Date:  1996-06-01       Impact factor: 3.857

3.  Spectroscopic and calorimetric investigation on the DNA triplex formed by d(CTCTTCTTTCTTTTCTTTCTTCTC) and d(GAGAAGAAAGA) at acidic pH.

Authors:  L E Xodo; G Manzini; F Quadrifoglio
Journal:  Nucleic Acids Res       Date:  1990-06-25       Impact factor: 16.971

4.  Analysis of a new class I gene mapping to the Hmt region of the mouse.

Authors:  K A Brorson; S Richards; S W Hunt; H Cheroutre; K F Lindahl; L Hood
Journal:  Immunogenetics       Date:  1989       Impact factor: 2.846

5.  The GAA*TTC triplet repeat expanded in Friedreich's ataxia impedes transcription elongation by T7 RNA polymerase in a length and supercoil dependent manner.

Authors:  E Grabczyk; K Usdin
Journal:  Nucleic Acids Res       Date:  2000-07-15       Impact factor: 16.971

6.  Unwinding of the third strand of a DNA triple helix, a novel activity of the SV40 large T-antigen helicase.

Authors:  V Kopel; A Pozner; N Baran; H Manor
Journal:  Nucleic Acids Res       Date:  1996-01-15       Impact factor: 16.971

7.  Formation of DNA triple helices inhibits DNA unwinding by the SV40 large T-antigen helicase.

Authors:  M Peleg; V Kopel; J A Borowiec; H Manor
Journal:  Nucleic Acids Res       Date:  1995-04-25       Impact factor: 16.971

8.  Characterization of a multisubunit human protein which selectively binds single stranded d(GA)n and d(GT)n sequence repeats in DNA.

Authors:  A Aharoni; N Baran; H Manor
Journal:  Nucleic Acids Res       Date:  1993-11-11       Impact factor: 16.971

9.  The capacity to form H-DNA cannot substitute for GAGA factor binding to a (CT)n*(GA)n regulatory site.

Authors:  Quinn Lu; John M Teare; Howard Granok; Marci J Swede; Jenny Xu; Sarah C R Elgin
Journal:  Nucleic Acids Res       Date:  2003-05-15       Impact factor: 16.971

10.  Sequence dependent effects in methylphosphonate deoxyribonucleotide double and triple helical complexes.

Authors:  L Kibler-Herzog; B Kell; G Zon; K Shinozuka; S Mizan; W D Wilson
Journal:  Nucleic Acids Res       Date:  1990-06-25       Impact factor: 16.971

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