Literature DB >> 4462565

Stablilzation of two-standard ribohomopolymer helices and destabilzation of a three-stranded helix by ethidium bromide.

M J Waring.   

Abstract

Thermal-denaturation profiles of helical polynucleotides have been measured in the presence of increasing concentrations of ethidium bromide. The poly(A).poly(U) helix is strongly stabilized by binding of ethidium, to much the same extent as is DNA, but the stabilizing effect on poly(I).poly(C) is much smaller. In the poly(A).2poly(U) system the drug selectively destabilizes and eventually destroys the triple helix, leaving only the double-helix-to-coil transition.

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Year:  1974        PMID: 4462565      PMCID: PMC1168409          DOI: 10.1042/bj1430483

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  18 in total

1.  Studies of the binding of ethidium bromide to transfer ribonucleic acid: absorption, fluorescence, ultracentrifugation and kinetic investigations.

Authors:  R Bittman
Journal:  J Mol Biol       Date:  1969-12-14       Impact factor: 5.469

2.  Interaction of acriflavine with DNA and RNA.

Authors:  L M Chan; Q Van Winkle
Journal:  J Mol Biol       Date:  1969-03-28       Impact factor: 5.469

3.  Topography of nucleic acid helices in solutions. 3. Interactions of spermine and spermidine derivatives with polyadenylic-polyuridylic and polyinosinic-polycytidylic acid helices.

Authors:  R Glasser; E J Gabbay
Journal:  Biopolymers       Date:  1968       Impact factor: 2.505

4.  Molecular conformations and structure transitions of RNA complementary helices and their possible biological significance.

Authors:  S Arnott; W Fuller; A Hodgson; I Prutton
Journal:  Nature       Date:  1968-11-09       Impact factor: 49.962

5.  Polynucleotide polymorphism in solution.

Authors:  S Bram
Journal:  Nat New Biol       Date:  1971-10-06

6.  Variation of the supercoils in closed circular DNA by binding of antibiotics and drugs: evidence for molecular models involving intercalation.

Authors:  M Waring
Journal:  J Mol Biol       Date:  1970-12-14       Impact factor: 5.469

7.  A dye-buoyant-density method for the detection and isolation of closed circular duplex DNA: the closed circular DNA in HeLa cells.

Authors:  R Radloff; W Bauer; J Vinograd
Journal:  Proc Natl Acad Sci U S A       Date:  1967-05       Impact factor: 11.205

8.  Structural requirements for the binding of ethidium to nucleic acids.

Authors:  M J Waring
Journal:  Biochim Biophys Acta       Date:  1966-02-21

9.  Topography of nucleic acid helices in solutions. I. The nonidentity of polyadenylic-polyuridylic and polyinosinic-polycytidylic acid helices.

Authors:  E J Gabbay
Journal:  Biochemistry       Date:  1966-09       Impact factor: 3.162

10.  Topography of nucleic acid helices in solutions. Comparative studies of the interactions of aliphatic diammonium salts with double- and triple-stranded deoxyribohomopolymers, hybrid homopolymers, and ribohomopolymers.

Authors:  E J Gabbay; R Glaser
Journal:  Biochim Biophys Acta       Date:  1970-11-12
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  13 in total

1.  Stereochemical aspects of the interaction between steroidal diamines and DNA.

Authors:  M J Waring; S M Henley
Journal:  Nucleic Acids Res       Date:  1975-04       Impact factor: 16.971

2.  Drug binding to higher ordered DNA structures: netropsin complexation with a nucleic acid triple helix.

Authors:  Y W Park; K J Breslauer
Journal:  Proc Natl Acad Sci U S A       Date:  1992-07-15       Impact factor: 11.205

3.  A fiber optic biosensor for fluorimetric detection of triple-helical DNA.

Authors:  A H Uddin; P A Piunno; R H Hudson; M J Damha; U J Krull
Journal:  Nucleic Acids Res       Date:  1997-10-15       Impact factor: 16.971

4.  DNA sequence specificity of a naphthylquinoline triple helix-binding ligand.

Authors:  S A Cassidy; L Strekowski; K R Fox
Journal:  Nucleic Acids Res       Date:  1996-11-01       Impact factor: 16.971

5.  An ethidium-induced double helix of poly(dA)-poly(rU).

Authors:  E A Lehrman; D M Crothers
Journal:  Nucleic Acids Res       Date:  1977       Impact factor: 16.971

6.  Complete disproportionation of duplex poly(dT)*poly(dA) into triplex poly(dT)*poly(dA)*poly(dT) and poly(dA) by coralyne.

Authors:  Matjaz Polak; Nicholas V Hud
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

7.  Base specificity in the interaction of ethidium with synthetic polyribonucleotides.

Authors:  Y Babayan; G Manzini; L E Xodo; F Quadrifoglio
Journal:  Nucleic Acids Res       Date:  1987-07-24       Impact factor: 16.971

8.  Mechanisms of small molecule-DNA interactions probed by single-molecule force spectroscopy.

Authors:  Ali A Almaqwashi; Thayaparan Paramanathan; Ioulia Rouzina; Mark C Williams
Journal:  Nucleic Acids Res       Date:  2016-04-16       Impact factor: 16.971

9.  Self-catalyzed cyclization of the intervening sequence RNA of Tetrahymena: inhibition by intercalating dyes.

Authors:  N K Tanner; T R Cech
Journal:  Nucleic Acids Res       Date:  1985-11-11       Impact factor: 16.971

10.  The binding of echinomycin to deoxyribonucleic acid.

Authors:  S P Wakelin; M J Waring
Journal:  Biochem J       Date:  1976-09-01       Impact factor: 3.857

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