Literature DB >> 3951987

The tetraribonucleotide rCpGpCpG forms a left-handed Z-RNA double-helix.

P W Davis, K Hall, P Cruz, I Tinoco, T Neilson.   

Abstract

NMR and circular dichroism studies show that the RNA tetranucleotide rCpGpCpG can form a Z-RNA left-handed double-helix. In 1.0 M NaClO4, circular dichroism measurements indicate that the tetramer is in the A-form. In 6.0 M NaClO4, there is a characteristic change in the circular dichroism, indicating that the tetramer adopts a left-handed Z-form. This conformation is verified by phosphorus and proton NMR studies. The 31P spectrum shows a large downfield shift in one of the resonances upon an increase in salt concentration. Proton nuclear Overhauser effect (NOE) experiments indicate that the guanosines are in the syn conformation. These results are consistent with the formation of a Z-form double-helix.

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Year:  1986        PMID: 3951987      PMCID: PMC339503          DOI: 10.1093/nar/14.3.1279

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  16 in total

1.  Salt-induced co-operative conformational change of a synthetic DNA: equilibrium and kinetic studies with poly (dG-dC).

Authors:  F M Pohl; T M Jovin
Journal:  J Mol Biol       Date:  1972-06-28       Impact factor: 5.469

Review 2.  Structure of ribosomal RNA.

Authors:  H F Noller
Journal:  Annu Rev Biochem       Date:  1984       Impact factor: 23.643

3.  Helix geometry and hydration in an A-DNA tetramer: IC-C-G-G.

Authors:  B N Conner; C Yoon; J L Dickerson; R E Dickerson
Journal:  J Mol Biol       Date:  1984-04-25       Impact factor: 5.469

4.  High-salt d(CpGpCpG), a left-handed Z' DNA double helix.

Authors:  H Drew; T Takano; S Tanaka; K Itakura; R E Dickerson
Journal:  Nature       Date:  1980-08-07       Impact factor: 49.962

5.  Relative stability of guanosine-cytidine diribonucleotide cores: a 1H NMR assessment.

Authors:  A Sinclair; D Alkema; R A Bell; J M Coddington; D W Hughes; T Neilson; P J Romaniuk
Journal:  Biochemistry       Date:  1984-06-05       Impact factor: 3.162

6.  Sequence dependence of conformations of self-complementary duplex tetradeoxynucleotides containing cytosine and guanine.

Authors:  G A Thomas; W L Peticolas
Journal:  Biochemistry       Date:  1984-07-03       Impact factor: 3.162

7.  Right-handed and left-handed DNA: studies of B- and Z-DNA by using proton nuclear Overhauser effect and P NMR.

Authors:  D J Patel; S A Kozlowski; A Nordheim; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1982-03       Impact factor: 11.205

8.  Conformation of ribooligonucleotide duplexes containing an alternating C-G sequence which show an unusual circular dichroism spectrum.

Authors:  S Uesugi; M Ohkubo; E Ohtsuka; M Ikehara; Y Kobayashi; Y Kyogoku; H P Westerink; G A van der Marel; J H van Boom; C A Haasnoot
Journal:  J Biol Chem       Date:  1984-02-10       Impact factor: 5.157

9.  1H NMR and circular dichroism studies of the B and Z conformations of the self-complementary deoxyhexanucleotide d(m5C-G-C-G-m5-C-G): mechanism of the Z-B-coil transitions.

Authors:  S Tran-Dinh; J Taboury; J M Neumann; T Huynh-Dinh; B Genissel; B Langlois d'Estaintot; J Igolen
Journal:  Biochemistry       Date:  1984-03-27       Impact factor: 3.162

10.  Conformational analysis of r(CGCGCG) in aqueous solution: an A-type double helical conformation studied by two-dimensional nuclear Overhauser effect spectroscopy.

Authors:  H P Westerink; G A van der Marel; J H van Boom; C A Haasnoot
Journal:  Nucleic Acids Res       Date:  1984-05-25       Impact factor: 16.971

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  3 in total

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Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

2.  Conformational adaptation of UNCG loops upon crowding.

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3.  Adenosine-to-inosine editing of endogenous Z-form RNA by the deaminase ADAR1 prevents spontaneous MAVS-dependent type I interferon responses.

Authors:  Qiannan Tang; Rachel E Rigby; George R Young; Astrid Korning Hvidt; Tanja Davis; Tiong Kit Tan; Anne Bridgeman; Alain R Townsend; George Kassiotis; Jan Rehwinkel
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  3 in total

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