Literature DB >> 7402336

High-salt d(CpGpCpG), a left-handed Z' DNA double helix.

H Drew, T Takano, S Tanaka, K Itakura, R E Dickerson.   

Abstract

The DNA tetramer d(CpGpCpG) or CGCG crystallizes from high-salt solution as a left-handed double helix, the Z' helix. Its structure differs from that of the other known left-handed helix, Z-DNA, by a Cl'-exo sugar pucker at deoxyguanosines rather than C3'-endo, and these represent two alternative solutions to the same steric constraint arising from the syn glycosyl bond orientation. The apparent molecular basis for the Z to Z' transition in going from intermediate to high salt is substitution of a bound anion for water at guanine amino groups, and consequent charge repulsion of anions and backbone phosphates.

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Year:  1980        PMID: 7402336     DOI: 10.1038/286567a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  102 in total

1.  Facilitating structural transitions in DNA.

Authors:  M Waring
Journal:  Proc Natl Acad Sci U S A       Date:  2000-10-24       Impact factor: 11.205

2.  Intrinsic conformational energetics associated with the glycosyl torsion in DNA: a quantum mechanical study.

Authors:  Nicolas Foloppe; Brigitte Hartmann; Lennart Nilsson; Alexander D MacKerell
Journal:  Biophys J       Date:  2002-03       Impact factor: 4.033

3.  Crystal structure of d(GCGAAAGCT) containing a parallel-stranded duplex with homo base pairs and an anti-parallel duplex with Watson-Crick base pairs.

Authors:  Tomoko Sunami; Jiro Kondo; Tomonori Kobuna; Ichiro Hirao; Kimitsuna Watanabe; Kin-ichiro Miura; Akio Takénaka
Journal:  Nucleic Acids Res       Date:  2002-12-01       Impact factor: 16.971

4.  Crystal structures of a DNA octaplex with I-motif of G-quartets and its splitting into two quadruplexes suggest a folding mechanism of eight tandem repeats.

Authors:  Jiro Kondo; Wataru Adachi; Shun-ichi Umeda; Tomoko Sunami; Akio Takénaka
Journal:  Nucleic Acids Res       Date:  2004-05-07       Impact factor: 16.971

5.  Evidence for a new Z-type left-handed DNA helix: properties of Z(WC)-DNA.

Authors:  A T Ansevin; A H Wang
Journal:  Nucleic Acids Res       Date:  1990-10-25       Impact factor: 16.971

6.  Reaction conditions affect the specificity of bromoacetaldehyde as a probe for DNA cruciforms and B-Z junctions.

Authors:  M J McLean; J E Larson; F Wohlrab; R D Wells
Journal:  Nucleic Acids Res       Date:  1987-09-11       Impact factor: 16.971

7.  Unusual proton exchange properties of Z-form poly[d(G-C)].

Authors:  P A Mirau; D R Kearns
Journal:  Proc Natl Acad Sci U S A       Date:  1985-03       Impact factor: 11.205

8.  Computation of ionic distributions around charged biomolecular structures: results for right-handed and left-handed DNA.

Authors:  R Klement; D M Soumpasis; T M Jovin
Journal:  Proc Natl Acad Sci U S A       Date:  1991-06-01       Impact factor: 11.205

9.  Junction between Z and B conformations in a DNA restriction fragment: evaluation by Raman spectroscopy.

Authors:  R M Wartell; J Klysik; W Hillen; R D Wells
Journal:  Proc Natl Acad Sci U S A       Date:  1982-04       Impact factor: 11.205

10.  Right-handed and left-handed DNA: studies of B- and Z-DNA by using proton nuclear Overhauser effect and P NMR.

Authors:  D J Patel; S A Kozlowski; A Nordheim; A Rich
Journal:  Proc Natl Acad Sci U S A       Date:  1982-03       Impact factor: 11.205

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