Literature DB >> 3936938

Codon usage and genome composition.

G Bernardi, G Bernardi.   

Abstract

The GC levels of codon third positions from 49 genomes covering a wide phylogenetic range are linearly correlated with the GC levels of the corresponding genomes. Three different relationships have been found: one for prokaryotes and viruses, one for lower eukaryotes, and one for vertebrates. All points not fitting the first relationship can be brought into quasi coincidence with it when plotted against GC levels of coding sequences.

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Year:  1985        PMID: 3936938     DOI: 10.1007/bf02115693

Source DB:  PubMed          Journal:  J Mol Evol        ISSN: 0022-2844            Impact factor:   2.395


  1 in total

1.  The mosaic genome of warm-blooded vertebrates.

Authors:  G Bernardi; B Olofsson; J Filipski; M Zerial; J Salinas; G Cuny; M Meunier-Rotival; F Rodier
Journal:  Science       Date:  1985-05-24       Impact factor: 47.728

  1 in total
  44 in total

1.  Codon usage in plant genes.

Authors:  E E Murray; J Lotzer; M Eberle
Journal:  Nucleic Acids Res       Date:  1989-01-25       Impact factor: 16.971

2.  Equal G and C contents in histone genes indicate selection pressures on mRNA secondary structure.

Authors:  M A Huynen; D A Konings; P Hogeweg
Journal:  J Mol Evol       Date:  1992-04       Impact factor: 2.395

3.  Rapid determination of nucleotide content and its application to the study of genome structure.

Authors:  D E Krane; D L Hartl; H Ochman
Journal:  Nucleic Acids Res       Date:  1991-10-11       Impact factor: 16.971

4.  Phenomenological theory of GC/AT pressure on DNA base composition.

Authors:  A Wada; A Suyama; R Hanai
Journal:  J Mol Evol       Date:  1991-05       Impact factor: 2.395

5.  Codon usage divergence of homologous vertebrate genes and codon usage clock.

Authors:  M Long; J H Gillespie
Journal:  J Mol Evol       Date:  1991-01       Impact factor: 2.395

6.  The compositional properties of human genes.

Authors:  B Aïssani; G D'Onofrio; D Mouchiroud; K Gardiner; C Gautier; G Bernardi
Journal:  J Mol Evol       Date:  1991-06       Impact factor: 2.395

7.  Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins.

Authors:  G D'Onofrio; D Mouchiroud; B Aïssani; C Gautier; G Bernardi
Journal:  J Mol Evol       Date:  1991-06       Impact factor: 2.395

Review 8.  Codon preferences in free-living microorganisms.

Authors:  S G Andersson; C G Kurland
Journal:  Microbiol Rev       Date:  1990-06

9.  The unusual nucleotide content of the HIV RNA genome results in a biased amino acid composition of HIV proteins.

Authors:  B Berkhout; F J van Hemert
Journal:  Nucleic Acids Res       Date:  1994-05-11       Impact factor: 16.971

10.  Evidence of selection upon genomic GC-content in bacteria.

Authors:  Falk Hildebrand; Axel Meyer; Adam Eyre-Walker
Journal:  PLoS Genet       Date:  2010-09-09       Impact factor: 5.917

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