Literature DB >> 3917017

Three-state diagram for DNA.

V I Ivanov1, E E Minyat.   

Abstract

Experimental phase diagrams (A form, B form, Coil) were built in the coordinates (a, alcohol fraction: T, temperature) for the natural DNAs and poly d(A-T). The main parameter of the B-A transition,-cooperativity length, nu o, was estimated by the slopes of the branches A-B, A-Coil, B-Coil in the vicinity of the triple point: nu o = 10-20 base pairs, which corresponds to the energy for the B/A junction of 1.2-1.8 kcal/mol. We discovered two new effects which are due to the coexistence of the three different conformations in one polymeric molecule: an increase in the melting temperature above that for the 'ideal' triple point (i.e. for the case of the ideal phase transitions); a widening of the melting curve within the B-A transition range.

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Year:  1985        PMID: 3917017     DOI: 10.1080/07391102.1985.10508397

Source DB:  PubMed          Journal:  J Biomol Struct Dyn        ISSN: 0739-1102


  9 in total

1.  Sequence-dependent B<-->A transition in DNA evaluated with dimeric and trimeric scales.

Authors:  M Y Tolstorukov; V I Ivanov; G G Malenkov; R L Jernigan; V B Zhurkin
Journal:  Biophys J       Date:  2001-12       Impact factor: 4.033

2.  The B-A transition in superhelical DNA.

Authors:  V L Makarov; V I Ivanov
Journal:  Nucleic Acids Res       Date:  1990-02-25       Impact factor: 16.971

3.  Comparison of the solution and crystal conformations of (G + C)-rich fragments of DNA.

Authors:  M Vorlícková; J A Subirana; J Chládková; I Tejralová; T Huynh-Dinh; L Arnold; J Kypr
Journal:  Biophys J       Date:  1996-09       Impact factor: 4.033

4.  The detection of B-form/A-form junction in a deoxyribonucleotide duplex.

Authors:  V I Ivanov; L E Minchenkova; G Burckhardt; E Birch-Hirschfeld; H Fritzsche; C Zimmer
Journal:  Biophys J       Date:  1996-12       Impact factor: 4.033

5.  Conformation of the synthetic DNA poly(amino2dA-dT) duplex in high-salt and aqueous alcohol solutions.

Authors:  M Vorlícková; J Sági; A Szabolcs; A Szemzö; L Otvös; J Kypr
Journal:  Nucleic Acids Res       Date:  1988-01-11       Impact factor: 16.971

6.  Mechanochemical study of NaDNA and NaDNA-netropsin fibers in ethanol-water and trifluoroethanol-water solutions.

Authors:  Z Song; A Rupprecht; H Fritzsche
Journal:  Biophys J       Date:  1995-03       Impact factor: 4.033

7.  Conformational transitions of poly(dA-bromo5dU) and poly(dA-iodo5dU) in solution.

Authors:  M Vorlícková; J Chládková; J Kypr
Journal:  Nucleic Acids Res       Date:  1992-03-11       Impact factor: 16.971

8.  Mapping the B-A conformational transition along plasmid DNA.

Authors:  Karel Nejedlý; Jana Chládková; Michaela Vorlíckov; Iva Hrabcová; Jaroslav Kypr
Journal:  Nucleic Acids Res       Date:  2005-01-07       Impact factor: 16.971

Review 9.  Circular dichroism and conformational polymorphism of DNA.

Authors:  Jaroslav Kypr; Iva Kejnovská; Daniel Renciuk; Michaela Vorlícková
Journal:  Nucleic Acids Res       Date:  2009-02-03       Impact factor: 16.971

  9 in total

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