Literature DB >> 388227

Three-dimensional structure of hyper-modified nucleoside Q located in the wobbling position of tRNA.

S Yokoyama, T Miyazawa, Y Iitaka, Z Yamaizumi, H Kasai, S Nishimura.   

Abstract

The hyper-modified nucleoside Q (queuosine) is exclusively located in the wobbling position of anticodons of tRNATyr tRNAHis, tRNAAsn and tRNAAsp that recognise codons NAUC (ref. 1). Queuosine and its hexose-containing derivatives are widely distributed in microorganisms, animals and plants. We confirm here the chemical structure of queuosine as 7-(3, 4-trans-4, 5-cis-dihydroxy-1-cyclopenten-3-ylaminomethyl)-7-deazaguanosine (Fig. 1). The unique structural features of Q are the unusual cyclopentenediol side chain and the 7-deazaguanine ring. Queuosine is one of the most complicated modified nucleosides found thus far.

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Year:  1979        PMID: 388227     DOI: 10.1038/282107a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  24 in total

1.  Crystal structure of tRNA-guanine transglycosylase: RNA modification by base exchange.

Authors:  C Romier; K Reuter; D Suck; R Ficner
Journal:  EMBO J       Date:  1996-06-03       Impact factor: 11.598

2.  Anticodon-anticodon interaction induces conformational changes in tRNA: yeast tRNAAsp, a model for tRNA-mRNA recognition.

Authors:  D Moras; A C Dock; P Dumas; E Westhof; P Romby; J P Ebel; R Giegé
Journal:  Proc Natl Acad Sci U S A       Date:  1986-02       Impact factor: 11.205

3.  Temperature mediated variation of DNA secondary structure in (A.T) clusters; evidence by use of the oligopeptide netropsin as a structural probe.

Authors:  K E Reinert; D Geller; E Stutter
Journal:  Nucleic Acids Res       Date:  1981-05-25       Impact factor: 16.971

4.  From cyclohydrolase to oxidoreductase: discovery of nitrile reductase activity in a common fold.

Authors:  Steven G Van Lanen; John S Reader; Manal A Swairjo; Valérie de Crécy-Lagard; Bobby Lee; Dirk Iwata-Reuyl
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-14       Impact factor: 11.205

5.  ITC analysis of ligand binding to preQ₁ riboswitches.

Authors:  Joseph A Liberman; Jarrod T Bogue; Jermaine L Jenkins; Mohammad Salim; Joseph E Wedekind
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

6.  Functional promiscuity of the COG0720 family.

Authors:  Gabriela Phillips; Laura L Grochowski; Shilah Bonnett; Huimin Xu; Marc Bailly; Crysten Blaby-Haas; Basma El Yacoubi; Dirk Iwata-Reuyl; Robert H White; Valérie de Crécy-Lagard
Journal:  ACS Chem Biol       Date:  2011-10-26       Impact factor: 5.100

7.  Presence of queuine in Drosophila melanogaster: correlation of free pool with queuosine content of tRNA and effect of mutations in pteridine metabolism.

Authors:  K B Jacobson; W R Farkas; J R Katze
Journal:  Nucleic Acids Res       Date:  1981-05-25       Impact factor: 16.971

8.  A minimalist glutamyl-tRNA synthetase dedicated to aminoacylation of the tRNAAsp QUC anticodon.

Authors:  Mickaël Blaise; Hubert Dominique Becker; Gérard Keith; Christian Cambillau; Jacques Lapointe; Richard Giegé; Daniel Kern
Journal:  Nucleic Acids Res       Date:  2004-05-18       Impact factor: 16.971

9.  Discovery of novel bacterial queuine salvage enzymes and pathways in human pathogens.

Authors:  Yifeng Yuan; Rémi Zallot; Tyler L Grove; Daniel J Payan; Isabelle Martin-Verstraete; Sara Šepić; Seetharamsingh Balamkundu; Ramesh Neelakandan; Vinod K Gadi; Chuan-Fa Liu; Manal A Swairjo; Peter C Dedon; Steven C Almo; John A Gerlt; Valérie de Crécy-Lagard
Journal:  Proc Natl Acad Sci U S A       Date:  2019-09-03       Impact factor: 12.779

10.  Structure of a class II preQ1 riboswitch reveals ligand recognition by a new fold.

Authors:  Joseph A Liberman; Mohammad Salim; Jolanta Krucinska; Joseph E Wedekind
Journal:  Nat Chem Biol       Date:  2013-04-14       Impact factor: 15.040

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