Literature DB >> 3853464

Two tRNAIle1 species from an extreme thermophile, Thermus thermophilus HB8: effect of 2-thiolation of ribothymidine on the thermostability of tRNA.

N Horie, M Hara-Yokoyama, S Yokoyama, K Watanabe, Y Kuchino, S Nishimura, T Miyazawa.   

Abstract

From Thermus thermophilus HB8 grown at 65 degrees C, two major tRNAIle species have been purified by column chromatography and polyacrylamide gel electrophoresis. The nucleotide sequence of one of these two tRNAIle1 species (tRNAIle1a) has been determined to be pGGGCGAUUAGCUCAGCUGmGUDAGAGCGCACGCCUGAUt6AAGCGUGAGm7GUCGGUGGs2T psi CAm1AGUCCACCAUCGCCCACCAOH. The nucleotide sequence of the other species (tRNAIle1b) is found to be the same as that of tRNAIle1a except for the modification in position 54; tRNAIle1a has s2T(54) while tRNAIle1b has T(54). The melting temperature of tRNAIle1a is as high as 86.2 degrees C while that of tRNAIle1b is 83.3 degrees C. The single replacement of an oxygen atom (2-carbonyl oxygen) of T(54) by a sulfur atom significantly contributes to the thermostability of the tRNAIle1a species. In addition, the methylation of G(18) and A(58) possibly contributes to the thermostability of T. thermophilus tRNAIle1a and tRNAIle1b species.

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Year:  1985        PMID: 3853464     DOI: 10.1021/bi00342a004

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  20 in total

1.  Crystallographic analysis of RsmA, a ribosomal RNA small subunit methyltransferase A from Staphylococcus aureus.

Authors:  Yang Liu; Yuwei Zhu; Maikun Teng; Xu Li
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-07-29       Impact factor: 1.056

2.  Sequence of tRNA(Asp) from Thermus thermophilus HB8.

Authors:  G Keith; M Yusupov; C Briand; D Moras; D Kern; C ] Brion C [corrected to Briand
Journal:  Nucleic Acids Res       Date:  1993-09-11       Impact factor: 16.971

3.  Cloning and characterization of tRNA (m1A58) methyltransferase (TrmI) from Thermus thermophilus HB27, a protein required for cell growth at extreme temperatures.

Authors:  Louis Droogmans; Martine Roovers; Janusz M Bujnicki; Catherine Tricot; Thomas Hartsch; Victor Stalon; Henri Grosjean
Journal:  Nucleic Acids Res       Date:  2003-04-15       Impact factor: 16.971

4.  An atlas of RNA base pairs involving modified nucleobases with optimal geometries and accurate energies.

Authors:  Mohit Chawla; Romina Oliva; Janusz M Bujnicki; Luigi Cavallo
Journal:  Nucleic Acids Res       Date:  2015-06-27       Impact factor: 16.971

5.  Substrate tRNA recognition mechanism of eubacterial tRNA (m1A58) methyltransferase (TrmI).

Authors:  Hiroyuki Takuma; Natsumi Ushio; Masayuki Minoji; Ai Kazayama; Naoki Shigi; Akira Hirata; Chie Tomikawa; Anna Ochi; Hiroyuki Hori
Journal:  J Biol Chem       Date:  2015-01-15       Impact factor: 5.157

6.  Posttranscriptional modification of tRNA in thermophilic archaea (Archaebacteria).

Authors:  C G Edmonds; P F Crain; R Gupta; T Hashizume; C H Hocart; J A Kowalak; S C Pomerantz; K O Stetter; J A McCloskey
Journal:  J Bacteriol       Date:  1991-05       Impact factor: 3.490

7.  Structure determination of two new amino acid-containing derivatives of adenosine from tRNA of thermophilic bacteria and archaea.

Authors:  D M Reddy; P F Crain; C G Edmonds; R Gupta; T Hashizume; K O Stetter; F Widdel; J A McCloskey
Journal:  Nucleic Acids Res       Date:  1992-11-11       Impact factor: 16.971

8.  Influence of temperature on tRNA modification in archaea: Methanococcoides burtonii (optimum growth temperature [Topt], 23 degrees C) and Stetteria hydrogenophila (Topt, 95 degrees C).

Authors:  Kathleen R Noon; Rebecca Guymon; Pamela F Crain; James A McCloskey; Michael Thomm; Julianne Lim; Ricardo Cavicchioli
Journal:  J Bacteriol       Date:  2003-09       Impact factor: 3.490

9.  Mycobacterium tuberculosis Rv2118c codes for a single-component homotetrameric m1A58 tRNA methyltransferase.

Authors:  U Varshney; V Ramesh; A Madabushi; R Gaur; H S Subramanya; U L RajBhandary
Journal:  Nucleic Acids Res       Date:  2004-02-11       Impact factor: 16.971

10.  Archaeosine Modification of Archaeal tRNA: Role in Structural Stabilization.

Authors:  Ben Turner; Brett W Burkhart; Katrin Weidenbach; Robert Ross; Patrick A Limbach; Ruth A Schmitz; Valérie de Crécy-Lagard; Kenneth M Stedman; Thomas J Santangelo; Dirk Iwata-Reuyl
Journal:  J Bacteriol       Date:  2020-03-26       Impact factor: 3.490

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