Literature DB >> 3845322

Hydrogen bonding and biological specificity analysed by protein engineering.

A R Fersht, J P Shi, J Knill-Jones, D M Lowe, A J Wilkinson, D M Blow, P Brick, P Carter, M M Waye, G Winter.   

Abstract

The role of complementary hydrogen bonding as a determinant of biological specificity has been examined by protein engineering of the tyrosyl-tRNA synthetase. Deletion of a side chain between enzyme and substrate to leave an unpaired, uncharged hydrogen-bond donor or acceptor weakens binding energy by only 0.5-1.5 kcal mol-1. But the presence of an unpaired and charged donor or acceptor weakens binding by a further approximately 3 kcal mol-1.

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Year:  1985        PMID: 3845322     DOI: 10.1038/314235a0

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  216 in total

Review 1.  Inherited and experimentally induced changes in gating kinetics of muscle nicotinic acetylcholine receptor.

Authors:  C Bouzat; F J Barrantes
Journal:  J Mol Neurosci       Date:  1999 Aug-Oct       Impact factor: 3.444

2.  Ser45 plays an important role in managing both the equilibrium and transition state energetics of the streptavidin-biotin system.

Authors:  D E Hyre; I Le Trong; S Freitag; R E Stenkamp; P S Stayton
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

3.  Subunit-selective contribution to channel gating of the M4 domain of the nicotinic receptor.

Authors:  Cecilia Bouzat; Fernanda Gumilar; María del Carmen Esandi; Steven M Sine
Journal:  Biophys J       Date:  2002-04       Impact factor: 4.033

Review 4.  Aminoacyl-tRNA synthetases: versatile players in the changing theater of translation.

Authors:  Christopher Francklyn; John J Perona; Joern Puetz; Ya-Ming Hou
Journal:  RNA       Date:  2002-11       Impact factor: 4.942

5.  A simple physical model for binding energy hot spots in protein-protein complexes.

Authors:  Tanja Kortemme; David Baker
Journal:  Proc Natl Acad Sci U S A       Date:  2002-10-15       Impact factor: 11.205

6.  Accelerating electrostatic surface potential calculation with multi-scale approximation on graphics processing units.

Authors:  Ramu Anandakrishnan; Tom R W Scogland; Andrew T Fenley; John C Gordon; Wu-chun Feng; Alexey V Onufriev
Journal:  J Mol Graph Model       Date:  2010-06       Impact factor: 2.518

7.  Clathrin self-assembly involves coordinated weak interactions favorable for cellular regulation.

Authors:  Diane E Wakeham; Chih-Ying Chen; Barrie Greene; Peter K Hwang; Frances M Brodsky
Journal:  EMBO J       Date:  2003-10-01       Impact factor: 11.598

8.  Using Cooperatively Folded Peptides To Measure Interaction Energies and Conformational Propensities.

Authors:  Maziar S Ardejani; Evan T Powers; Jeffery W Kelly
Journal:  Acc Chem Res       Date:  2017-07-19       Impact factor: 22.384

9.  Structure-based optimization of cephalothin-analogue boronic acids as beta-lactamase inhibitors.

Authors:  Stefania Morandi; Federica Morandi; Emilia Caselli; Brian K Shoichet; Fabio Prati
Journal:  Bioorg Med Chem       Date:  2007-11-07       Impact factor: 3.641

10.  Protein engineering of the 2-haloacid halidohydrolase IVa from Pseudomonas cepacia MBA4.

Authors:  W Asmara; U Murdiyatmo; A J Baines; A T Bull; D J Hardman
Journal:  Biochem J       Date:  1993-05-15       Impact factor: 3.857

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