Literature DB >> 3838272

An algorithm to improve the computational efficiency of genetic linkage analysis.

M S Braverman.   

Abstract

The computational complexity of genetic linkage analysis can increase exponentially with the square of the number of alleles at a marker locus. Many of the most informative marker loci have a large number of associated alleles. The precise identities of the alleles are irrelevant to the linkage analysis so long as identity-by-descent and linkage-phase information are preserved. This paper introduces an algorithm which, by relabeling, reduces the number of alleles at the marker locus, thereby increasing the speed of the analysis. The relabeling scheme preserves linkage-phase and identity-by-descent information so the results of the analysis are unaffected. Unlike previously published methods, this algorithm can be applied to pedigrees of arbitrary structure with both complete and incomplete phenotypic information.

Mesh:

Year:  1985        PMID: 3838272     DOI: 10.1016/0010-4809(85)90004-7

Source DB:  PubMed          Journal:  Comput Biomed Res        ISSN: 0010-4809


  12 in total

1.  Linkage of congenital recessive deafness (gene DFNB10) to chromosome 21q22.3.

Authors:  B Bonné-Tamir; A L DeStefano; C E Briggs; R Adair; B Franklyn; S Weiss; M Korostishevsky; M Frydman; C T Baldwin; L A Farrer
Journal:  Am J Hum Genet       Date:  1996-06       Impact factor: 11.025

2.  A genomewide linkage study of preeclampsia/eclampsia reveals evidence for a candidate region on 4q.

Authors:  G A Harrison; K E Humphrey; N Jones; R Badenhop; G Guo; G Elakis; J A Kaye; R J Turner; M Grehan; A N Wilton; S P Brennecke; D W Cooper
Journal:  Am J Hum Genet       Date:  1997-05       Impact factor: 11.025

3.  Efficient computations in multilocus linkage analysis.

Authors:  G M Lathrop; J M Lalouel
Journal:  Am J Hum Genet       Date:  1988-03       Impact factor: 11.025

4.  The gene for autosomal dominant spinocerebellar ataxia (SCA1) maps telomeric to the HLA complex and is closely linked to the D6S89 locus in three large kindreds.

Authors:  H Y Zoghbi; C Jodice; L A Sandkuijl; T J Kwiatkowski; A E McCall; S A Huntoon; P Lulli; M Spadaro; M Litt; H M Cann
Journal:  Am J Hum Genet       Date:  1991-07       Impact factor: 11.025

5.  Polymorphic microsatellites and Wilson disease (WD).

Authors:  E A Stewart; A White; J Tomfohrde; S Osborne-Lawrence; L Prestridge; B Bonne-Tamir; I H Scheinberg; P St George-Hyslop; M Giagheddu; J W Kim
Journal:  Am J Hum Genet       Date:  1993-10       Impact factor: 11.025

6.  Machado Joseph disease maps to the same region of chromosome 14 as the spinocerebellar ataxia type 3 locus.

Authors:  E C Twist; L K Casaubon; M H Ruttledge; V S Rao; P M Macleod; J Radvany; Z Zhao; R N Rosenberg; L A Farrer; G A Rouleau
Journal:  J Med Genet       Date:  1995-01       Impact factor: 6.318

7.  An efficient strategy for gene mapping using multipoint linkage analysis: exclusion of the multiple endocrine neoplasia 2A (MEN2A) locus from chromosome 13.

Authors:  L A Farrer; P J Goodfellow; C M Lamarche; I Franjkovic; S Myers; B N White; J J Holden; J R Kidd; N E Simpson; K K Kidd
Journal:  Am J Hum Genet       Date:  1987-04       Impact factor: 11.025

8.  Machado-Joseph disease in pedigrees of Azorean descent is linked to chromosome 14.

Authors:  P St George-Hyslop; E Rogaeva; J Huterer; T Tsuda; J Santos; J L Haines; K Schlumpf; E I Rogaev; Y Liang; D R McLachlan
Journal:  Am J Hum Genet       Date:  1994-07       Impact factor: 11.025

9.  Machado Joseph disease is not an allele of the spinocerebellar ataxia 2 locus.

Authors:  E C Twist; L A Farrer; P M Macleod; J Radvany; S Chamberlain; R N Rosenberg; G A Rouleau
Journal:  Hum Genet       Date:  1994-03       Impact factor: 4.132

10.  Waardenburg syndrome (WS) type I is caused by defects at multiple loci, one of which is near ALPP on chromosome 2: first report of the WS consortium.

Authors:  L A Farrer; K M Grundfast; J Amos; K S Arnos; J H Asher; P Beighton; S R Diehl; J Fex; C Foy; T B Friedman
Journal:  Am J Hum Genet       Date:  1992-05       Impact factor: 11.025

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