Literature DB >> 3786145

Multiple sequence alignment by consensus.

M S Waterman.   

Abstract

An algorithm for multiple sequence alignment is given that matches words of length and degree of mismatch chosen by the user. The alignment maximizes an alignment scoring function. The method is based on a novel extension of our consensus sequence methods. The algorithm works for both DNA and protein sequences, and from earlier work on consensus sequences, it is possible to estimate statistical significance.

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Year:  1986        PMID： 3786145      PMCID： PMC311931          DOI： 10.1093/nar/14.22.9095

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  6 in total

1.  Frequency of insertion-deletion, transversion, and transition in the evolution of 5S ribosomal RNA.

Authors:  D Sankoff; R J Cedergren; G Lapalme
Journal:  J Mol Evol       Date:  1976-03-29       Impact factor: 2.395

2.  A multiple sequence alignment program.

Authors:  E Sobel; H M Martinez
Journal:  Nucleic Acids Res       Date:  1986-01-10       Impact factor: 16.971

3.  Simultaneous comparison of three protein sequences.

Authors:  M Murata; J S Richardson; J L Sussman
Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

4.  Rigorous pattern-recognition methods for DNA sequences. Analysis of promoter sequences from Escherichia coli.

Authors:  D J Galas; M Eggert; M S Waterman
Journal:  J Mol Biol       Date:  1985-11-05       Impact factor: 5.469

5.  Pattern recognition in several sequences: consensus and alignment.

Authors:  M S Waterman; R Arratia; D J Galas
Journal:  Bull Math Biol       Date:  1984       Impact factor: 1.758

6.  An efficient method for finding repeats in molecular sequences.

Authors:  H M Martinez
Journal:  Nucleic Acids Res       Date:  1983-07-11       Impact factor: 16.971
  6 in total
  19 in total

1.  Consensus sequences based on plurality rule.

Authors:  W H Day; F R McMorris
Journal:  Bull Math Biol       Date:  1992-11       Impact factor: 1.758

2.  Critical comparison of consensus methods for molecular sequences.

Authors:  W H Day; F R McMorris
Journal:  Nucleic Acids Res       Date:  1992-03-11       Impact factor: 16.971

3.  Multiple alignment using simulated annealing: branch point definition in human mRNA splicing.

Authors:  A V Lukashin; J Engelbrecht; S Brunak
Journal:  Nucleic Acids Res       Date:  1992-05-25       Impact factor: 16.971

4.  A survey of multiple sequence comparison methods.

Authors:  S C Chan; A K Wong; D K Chiu
Journal:  Bull Math Biol       Date:  1992-07       Impact factor: 1.758

5.  Consensus weak hierarchies.

Authors:  F R McMorris; R C Powers
Journal:  Bull Math Biol       Date:  1991       Impact factor: 1.758

6.  Efficient methods for multiple sequence alignment with guaranteed error bounds.

Authors:  D Gusfield
Journal:  Bull Math Biol       Date:  1993-01       Impact factor: 1.758

7.  A multiple sequence comparison method.

Authors:  A K Wong; S C Chan; D K Chiu
Journal:  Bull Math Biol       Date:  1993-03       Impact factor: 1.758

8.  Study of the role of the highly conserved residues Arg9 and Arg64 in the catalytic function of human N-acetyltransferases NAT1 and NAT2 by site-directed mutagenesis.

Authors:  C Deloménie; G H Goodfellow; R Krishnamoorthy; D M Grant; J M Dupret
Journal:  Biochem J       Date:  1997-04-01       Impact factor: 3.857

9.  A flexible method to align large numbers of biological sequences.

Authors:  W R Taylor
Journal:  J Mol Evol       Date:  1988 Dec-1989 Feb       Impact factor: 2.395

10.  Primary and hypothetical secondary structure of Drosophila melanogaster U6 RNA.

Authors:  H Saluz; Y Choffat; E Kubli
Journal:  Nucleic Acids Res       Date:  1988-02-11       Impact factor: 16.971
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