Literature DB >> 3755494

Structural chemistry of biomolecular hydration via computer simulation: the proximity criterion.

M Mezei, D L Beveridge.   

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Year:  1986        PMID： 3755494     DOI： 10.1016/0076-6879(86)27005-6

Source DB:  PubMed          Journal:  Methods Enzymol        ISSN： 0076-6879            Impact factor:   1.600


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  19 in total

1.  Ion motions in molecular dynamics simulations on DNA.

Authors:  Sergei Y Ponomarev; Kelly M Thayer; David L Beveridge
Journal:  Proc Natl Acad Sci U S A       Date:  2004-10-01       Impact factor: 11.205

2.  Studies of base pair sequence effects on DNA solvation based on all-atom molecular dynamics simulations.

Authors:  Surjit B Dixit; Mihaly Mezei; David L Beveridge
Journal:  J Biosci       Date:  2012-07       Impact factor: 1.826

3.  Interfacial water as a "hydration fingerprint" in the noncognate complex of BamHI.

Authors:  Monika Fuxreiter; Mihaly Mezei; István Simon; Roman Osman
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

4.  Spectroscopic and molecular dynamics evidence for a sequential mechanism for the A-to-B transition in DNA.

Authors:  Kelly M Knee; Surjit B Dixit; Colin Echeverría Aitken; Sergei Ponomarev; D L Beveridge; Ishita Mukerji
Journal:  Biophys J       Date:  2008-03-07       Impact factor: 4.033

5.  Proximal distributions from angular correlations: a measure of the onset of coarse-graining.

Authors:  Kippi M Dyer; B Montgomery Pettitt
Journal:  J Chem Phys       Date:  2013-12-07       Impact factor: 3.488

6.  Diffusion of solvent around biomolecular solutes: a molecular dynamics simulation study.

Authors:  V A Makarov; M Feig; B K Andrews; B M Pettitt
Journal:  Biophys J       Date:  1998-07       Impact factor: 4.033

7.  Note: On the universality of proximal radial distribution functions of proteins.

Authors:  Bin Lin; B Montgomery Pettitt
Journal:  J Chem Phys       Date:  2011-03-14       Impact factor: 3.488

8.  A 5-nanosecond molecular dynamics trajectory for B-DNA: analysis of structure, motions, and solvation.

Authors:  M A Young; G Ravishanker; D L Beveridge
Journal:  Biophys J       Date:  1997-11       Impact factor: 4.033

9.  Free Energy Calculations Based on Coupling Proximal Distribution Functions and Thermodynamic Cycles.

Authors:  Shu-Ching Ou; B Montgomery Pettitt
Journal:  J Chem Theory Comput       Date:  2019-03-06       Impact factor: 6.006

10.  Effects of Acids, Bases, and Heteroatoms on Proximal Radial Distribution Functions for Proteins.

Authors:  Bao Linh Nguyen; B Montgomery Pettitt
Journal:  J Chem Theory Comput       Date:  2015-04-14       Impact factor: 6.006
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