Literature DB >> 3753786

Assembly of overlapping DNA sequences by a program written in BASIC for 64K CP/M and MS-DOS IBM-compatible microcomputers.

R E Johnston, J M Mackenzie, W G Dougherty.   

Abstract

The SEQALIGN programs1 described in this report aid in the assembly of up to 100 individual overlapping DNA sequences generated by M-13 subcloning and sequencing methods. The program produces a printout of the aligned sequences presented in register. Use of the program will be facilitated because 1) it is written with the Microsoft BASIC interpreter, 2) sequence data may be entered and edited using WORDSTAR or similar word processing programs, and 3) hardware requirements for execution of the program on CP/M or MS-DOS (IBM-PC compatible) systems are minimal.

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Year:  1986        PMID： 3753786      PMCID： PMC339436          DOI： 10.1093/nar/14.1.517

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  8 in total

1.  Identification of two methionine transfer RNA genes in the maize mitochondrial genome.

Authors:  T D Parks; W G Dougherty; C S Levings; D H Timothy
Journal:  Plant Physiol       Date:  1984-12       Impact factor: 8.340

2.  SEQAID: a DNA sequence assembling program based on a mathematical model.

Authors:  H Peltola; H Söderlund; E Ukkonen
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

3.  Apple II PASCAL programs for molecular biologists.

Authors:  B Malthiery; B Bellon; D Giorgi; B Jacq
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

4.  New M13 vectors for cloning.

Authors:  J Messing
Journal:  Methods Enzymol       Date:  1983       Impact factor: 1.600

5.  GEL, a DNA sequencing project management system.

Authors:  J Clayton; L Kedes
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

6.  A new computer method for the storage and manipulation of DNA gel reading data.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1980-08-25       Impact factor: 16.971

7.  Automation of the computer handling of gel reading data produced by the shotgun method of DNA sequencing.

Authors:  R Staden
Journal:  Nucleic Acids Res       Date:  1982-08-11       Impact factor: 16.971

8.  Computer programs for the assembly of DNA sequences.

Authors:  T R Gingeras; J P Milazzo; D Sciaky; R J Roberts
Journal:  Nucleic Acids Res       Date:  1979-09-25       Impact factor: 16.971
  8 in total
  10 in total

1.  A sequence assembly and editing program for efficient management of large projects.

Authors:  S Dear; R Staden
Journal:  Nucleic Acids Res       Date:  1991-07-25       Impact factor: 16.971

2.  Nucleotide sequences and mutational analysis of the structural genes for nitrogenase 2 of Azotobacter vinelandii.

Authors:  R D Joerger; T M Loveless; R N Pau; L A Mitchenall; B H Simon; P E Bishop
Journal:  J Bacteriol       Date:  1990-06       Impact factor: 3.490

3.  A single nucleotide change in the E2 glycoprotein gene of Sindbis virus affects penetration rate in cell culture and virulence in neonatal mice.

Authors:  N L Davis; F J Fuller; W G Dougherty; R A Olmsted; R E Johnston
Journal:  Proc Natl Acad Sci U S A       Date:  1986-09       Impact factor: 11.205

4.  Sindbis virus mutations which coordinately affect glycoprotein processing, penetration, and virulence in mice.

Authors:  D L Russell; J M Dalrymple; R E Johnston
Journal:  J Virol       Date:  1989-04       Impact factor: 5.103

5.  Cloning, expression, and nucleotide sequence of the Lactobacillus helveticus 481 gene encoding the bacteriocin helveticin J.

Authors:  M C Joerger; T R Klaenhammer
Journal:  J Bacteriol       Date:  1990-11       Impact factor: 3.490

6.  Characteristics of orf1 and orf2 in the anfHDGK genomic region encoding nitrogenase 3 of Azotobacter vinelandii.

Authors:  P V Mylona; R Premakumar; R N Pau; P E Bishop
Journal:  J Bacteriol       Date:  1996-01       Impact factor: 3.490

7.  Nucleotide sequence and mutational analysis of the vnfENX region of Azotobacter vinelandii.

Authors:  E D Wolfinger; P E Bishop
Journal:  J Bacteriol       Date:  1991-12       Impact factor: 3.490

8.  Two nifA-like genes required for expression of alternative nitrogenases by Azotobacter vinelandii.

Authors:  R D Joerger; M R Jacobson; P E Bishop
Journal:  J Bacteriol       Date:  1989-06       Impact factor: 3.490

9.  Nucleotide sequence and genetic analysis of the nifB-nifQ region from Azotobacter vinelandii.

Authors:  R D Joerger; P E Bishop
Journal:  J Bacteriol       Date:  1988-04       Impact factor: 3.490

10.  Nucleotide sequence and mutational analysis of the structural genes (anfHDGK) for the second alternative nitrogenase from Azotobacter vinelandii.

Authors:  R D Joerger; M R Jacobson; R Premakumar; E D Wolfinger; P E Bishop
Journal:  J Bacteriol       Date:  1989-02       Impact factor: 3.490
  10 in total

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