Literature DB >> 3753769

GENEUS, a computer system for DNA and protein sequence analysis containing an information retrieval system for the EMBL data library.

R Harr, P Fällman, M Häggström, L Wahlström, P Gustafsson.   

Abstract

We describe a comprehensive computer system, GENEUS, for extensive DNA, RNA and protein sequence analysis. The analysis system is developed for the DEC VAX/VMS computer and uses the EMBL Nucleic Acid Sequence Data Library. Help information is available on-line on terminal screen. To speed up system handling, a qualifier oriented user communication is employed. All results are stored on files making them accessible to the computer editor. An information retrieval system for the EMBL Nucleotide Sequence Data Library is also described. A defined data-base interface allows connection to other analysis programs.+

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Year:  1986        PMID: 3753769      PMCID: PMC339401          DOI: 10.1093/nar/14.1.273

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  14 in total

Review 1.  Empirical predictions of protein conformation.

Authors:  P Y Chou; G D Fasman
Journal:  Annu Rev Biochem       Date:  1978       Impact factor: 23.643

2.  Prediction of protein antigenic determinants from amino acid sequences.

Authors:  T P Hopp; K R Woods
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

3.  A fast homology program for aligning biological sequences.

Authors:  P Taylor
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

4.  Enhanced graphic matrix analysis of nucleic acid and protein sequences.

Authors:  J V Maizel; R P Lenk
Journal:  Proc Natl Acad Sci U S A       Date:  1981-12       Impact factor: 11.205

5.  Pattern recognition in nucleic acid sequences. I. A general method for finding local homologies and symmetries.

Authors:  W B Goad; M I Kanehisa
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

6.  Codon preference and its use in identifying protein coding regions in long DNA sequences.

Authors:  R Staden; A D McLachlan
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

7.  Two-dimensional graphic analysis of DNA sequence homologies.

Authors:  R Harr; P Hagblom; P Gustafsson
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

8.  A simple method for displaying the hydropathic character of a protein.

Authors:  J Kyte; R F Doolittle
Journal:  J Mol Biol       Date:  1982-05-05       Impact factor: 5.469

9.  Cloning and sequencing of the genes encoding the alpha and beta subunits of C-phycocyanin from the cyanobacterium Agmenellum quadruplicatum.

Authors:  T J Pilot; J L Fox
Journal:  Proc Natl Acad Sci U S A       Date:  1984-11       Impact factor: 11.205

10.  Search algorithm for pattern match analysis of nucleic acid sequences.

Authors:  R Harr; M Häggström; P Gustafsson
Journal:  Nucleic Acids Res       Date:  1983-05-11       Impact factor: 16.971

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  28 in total

1.  Juxtaposition of expressed variable antigen genes with a conserved telomere in the bacterium Borrelia hermsii.

Authors:  T Kitten; A G Barbour
Journal:  Proc Natl Acad Sci U S A       Date:  1990-08       Impact factor: 11.205

2.  Cloning of the cpcE and cpcF genes from Synechococcus sp. PCC 6301 and their inactivation in Synechococcus sp. PCC 7942.

Authors:  R P Bhalerao; L K Lind; P Gustafsson
Journal:  Plant Mol Biol       Date:  1994-10       Impact factor: 4.076

3.  The lcrE gene is part of an operon in the lcr region of Yersinia enterocolitica O:3.

Authors:  A M Viitanen; P Toivanen; M Skurnik
Journal:  J Bacteriol       Date:  1990-06       Impact factor: 3.490

4.  PapD, a periplasmic transport protein in P-pilus biogenesis.

Authors:  F Lindberg; J M Tennent; S J Hultgren; B Lund; S Normark
Journal:  J Bacteriol       Date:  1989-11       Impact factor: 3.490

5.  Transcriptional organization of the phycocyanin subunit gene clusters of the cyanobacterium Anacystis nidulans UTEX 625.

Authors:  S R Kalla; L K Lind; J Lidholm; P Gustafsson
Journal:  J Bacteriol       Date:  1988-07       Impact factor: 3.490

6.  Oligonucleotide primers for DNA amplification of the early regions 1, 6, and 7 from human papillomavirus types 6, 11, 16, 18, 31, and 33.

Authors:  M Evander; E Bodén; L Bjersing; E Rylander; G Wadell
Journal:  Arch Virol       Date:  1991       Impact factor: 2.574

7.  Duplication of the psbA gene in the chloroplast genome of two Pinus species.

Authors:  J Lidholm; A Szmidt; P Gustafsson
Journal:  Mol Gen Genet       Date:  1991-05

8.  Isolation and sequence of complementary DNA encoding human extracellular superoxide dismutase.

Authors:  K Hjalmarsson; S L Marklund; A Engström; T Edlund
Journal:  Proc Natl Acad Sci U S A       Date:  1987-09       Impact factor: 11.205

9.  A novel dihydrofolate reductase cassette inserted in an integron borne on a Tn21-like element.

Authors:  E Heikkilä; M Skurnik; L Sundström; P Huovinen
Journal:  Antimicrob Agents Chemother       Date:  1993-06       Impact factor: 5.191

10.  Identification and expression of the chloroplast clpP gene in the conifer Pinus contorta.

Authors:  A K Clarke; P Gustafsson; J A Lidholm
Journal:  Plant Mol Biol       Date:  1994-11       Impact factor: 4.076

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