Literature DB >> 3753765

Data structures for DNA sequence manipulation.

C B Lawrence.   

Abstract

Two data structures designated Fragment and Construct are described. The Fragment data structure defines a continuous nucleic acid sequence from a unique genetic origin. The Construct defines a continuous sequence composed of sequences from multiple genetic origins. These data structures are manipulated by a set of software tools to simulate the construction of mosaic recombinant DNA molecules. They are also used as an interface between sequence data banks and analytical programs.

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Year:  1986        PMID: 3753765      PMCID: PMC339377          DOI: 10.1093/nar/14.1.205

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  5 in total

1.  KLONER; a computer program to simulate recombinant DNA strategies by restriction map manipulation.

Authors:  P R Caron
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

2.  Recombinant DNA data management at the restriction and functional site level.

Authors:  D Shalloway; N R Deering
Journal:  Nucleic Acids Res       Date:  1984-01-11       Impact factor: 16.971

3.  GENESIS, a knowledge-based genetic engineering simulation system for representation of genetic data and experiment planning.

Authors:  P Friedland; L Kedes; D Brutlag; Y Iwasaki; R Bach
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

4.  Formal description of a DNA oriented computer language.

Authors:  J L Schroeder; F R Blattner
Journal:  Nucleic Acids Res       Date:  1982-01-11       Impact factor: 16.971

5.  A design for computer nucleic-acid-sequence storage, retrieval, and manipulation.

Authors:  T D Schneider; G D Stormo; J S Haemer; L Gold
Journal:  Nucleic Acids Res       Date:  1982-05-11       Impact factor: 16.971

  5 in total
  1 in total

Review 1.  No wisdom in the crowd: genome annotation in the era of big data - current status and future prospects.

Authors:  Antoine Danchin; Christos Ouzounis; Taku Tokuyasu; Jean-Daniel Zucker
Journal:  Microb Biotechnol       Date:  2018-05-28       Impact factor: 5.813

  1 in total

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