Literature DB >> 3707542

The effect of HhaI methylation on DNA local structure.

K R Fox.   

Abstract

The effect of methylating the central cytosine in the sequence GCGC on the sensitivity to digestion by deoxyribonuclease I was investigated. Examination of five such sites shows that the extra methyl group renders the bond on its 5' side more susceptible to cleavage, and this is interpreted by suggesting that it causes small changes in the local DNA phosphate orientation.

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Year:  1986        PMID: 3707542      PMCID: PMC1146547          DOI: 10.1042/bj2340213

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  18 in total

1.  A new method for sequencing DNA.

Authors:  A M Maxam; W Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  1977-02       Impact factor: 11.205

2.  Nucleotide sequence specificity of restriction endonucleases.

Authors:  H O Smith
Journal:  Science       Date:  1979-08-03       Impact factor: 47.728

3.  Structural specificities of five commonly used DNA nucleases.

Authors:  H R Drew
Journal:  J Mol Biol       Date:  1984-07-15       Impact factor: 5.469

4.  A hypothesis on a specific sequence-dependent conformation of DNA and its relation to the binding of the lac-repressor protein.

Authors:  A Klug; A Jack; M A Viswamitra; O Kennard; Z Shakked; T A Steitz
Journal:  J Mol Biol       Date:  1979-07-15       Impact factor: 5.469

5.  Protein-DNA interaction investigated by binding Escherichia coli lac repressor protein to poly(d(A-U-HgX)).

Authors:  T J Richmond; T A Steitz
Journal:  J Mol Biol       Date:  1976-05-05       Impact factor: 5.469

6.  Sequence-specific binding of echinomycin to DNA: evidence for conformational changes affecting flanking sequences.

Authors:  C M Low; H R Drew; M J Waring
Journal:  Nucleic Acids Res       Date:  1984-06-25       Impact factor: 16.971

Review 7.  DNA methylation and gene function.

Authors:  A Razin; A D Riggs
Journal:  Science       Date:  1980-11-07       Impact factor: 47.728

8.  Sequence preferences in the binding to DNA of triostin A and TANDEM as reported by DNase I footprinting.

Authors:  C M Low; R K Olsen; M J Waring
Journal:  FEBS Lett       Date:  1984-10-29       Impact factor: 4.124

9.  Lac repressor binding to operator analogues: comparison of poly(d(A-T)), poly(d(A-BrU)), and poly(d(A-U)).

Authors:  S Y Lin; A D Riggs
Journal:  Biochem Biophys Res Commun       Date:  1971-12-17       Impact factor: 3.575

10.  DNA structural variations produced by actinomycin and distamycin as revealed by DNAase I footprinting.

Authors:  K R Fox; M J Waring
Journal:  Nucleic Acids Res       Date:  1984-12-21       Impact factor: 16.971

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  5 in total

1.  Binding of the transcription factor EBP-80 mediates the methylation response of an intracisternal A-particle long terminal repeat promoter.

Authors:  M Falzon; E L Kuff
Journal:  Mol Cell Biol       Date:  1991-01       Impact factor: 4.272

2.  Cytosine methylation in CTF and Sp1 recognition sites of an HSV tk promoter: effects on transcription in vivo and on factor binding in vitro.

Authors:  J Ben-Hattar; P Beard; J Jiricny
Journal:  Nucleic Acids Res       Date:  1989-12-25       Impact factor: 16.971

3.  Probing DNA shape and methylation state on a genomic scale with DNase I.

Authors:  Allan Lazarovici; Tianyin Zhou; Anthony Shafer; Ana Carolina Dantas Machado; Todd R Riley; Richard Sandstrom; Peter J Sabo; Yan Lu; Remo Rohs; John A Stamatoyannopoulos; Harmen J Bussemaker
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-01       Impact factor: 11.205

4.  Differences in the accessibility of methylated and unmethylated DNA to DNase I.

Authors:  S Kochanek; D Renz; W Doerfler
Journal:  Nucleic Acids Res       Date:  1993-12-25       Impact factor: 16.971

5.  Nuclear extracts of chicken embryos promote an active demethylation of DNA by excision repair of 5-methyldeoxycytidine.

Authors:  J P Jost
Journal:  Proc Natl Acad Sci U S A       Date:  1993-05-15       Impact factor: 11.205

  5 in total

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