Literature DB >> 3707530

The effect of feedback on pathway transient response.

J S Easterby.   

Abstract

The effect of variation of the rate of input of material on the transient behaviour of metabolic pathways is examined. This reveals the existence of three transient times which make up the overall pathway transient. Two of these have been described previously and represent the times required for the accumulation of the free intermediate pool and the pool of enzyme-bound intermediate. They are state functions and as such are independent of the way in which the steady state was reached. The third is attributable to the variation in the rate of input of material to the pathway. It is dependent on three further factors. These are (a) the time required for the initial enzyme to reach its own steady state, (b) substrate depletion and (c) feedback. The description of the transient is: (Formula: see text) where V0 represents the rate of input and Vss represents the steady-state flux. The transient time associated with the transition between steady-states is shown to be a simple function of the transients for the establishment of each steady state from rest and may be expressed as: tau = tau b-Va/Vb . tau a where Va and Vb refer to the fluxes in the two steady states and tau a and tau b represent the transient times for the establishment of each of the steady-states from rest. The total pathway transient may now be completely defined as: (formula: see text) where summation over all intermediates, I, is implied. The significance of this to the analysis of pathway behaviour is discussed with more general examples of pathway transient analysis.

Mesh:

Substances:

Year:  1986        PMID: 3707530      PMCID: PMC1153110          DOI: 10.1042/bj2330871

Source DB:  PubMed          Journal:  Biochem J        ISSN: 0264-6021            Impact factor:   3.857


  34 in total

1.  The anomalous kinetics of coupled aspartate aminotransferase and malate dehydrogenase. Evidence for compartmentation of oxaloacetate.

Authors:  C F Bryce; D C Williams; R A John; P Fasella
Journal:  Biochem J       Date:  1976-03-01       Impact factor: 3.857

2.  On the free energy "cost of transition" in intermediary metabolic processes and the evolution of cellular infrastructure.

Authors:  G R Welch
Journal:  J Theor Biol       Date:  1977-09-21       Impact factor: 2.691

3.  The kinetics of coupled enzyme reactions. Applications to the assay of glucokinase, with glucose 6-phosphate dehydrogenase as coupling enzyme.

Authors:  A C Storer; A Cornish-Bowden
Journal:  Biochem J       Date:  1974-07       Impact factor: 3.857

4.  The behaviour of coupled enzyme systems in the transient and steady-state regions of the reaction.

Authors:  P W Kuchel; D V Roberts
Journal:  Biochim Biophys Acta       Date:  1974-10-17

5.  A kinetic analysis of coupled enzyme assays.

Authors:  W R McClure
Journal:  Biochemistry       Date:  1969-07       Impact factor: 3.162

6.  Optimizing coupled enzyme assays.

Authors:  W W Cleland
Journal:  Anal Biochem       Date:  1979-10-15       Impact factor: 3.365

7.  salmonella typhimurium/enzymol.

Authors:  P F Cook; R T Wedding
Journal:  Arch Biochem Biophys       Date:  1977-01-15       Impact factor: 4.013

8.  Significance of the enzyme complex that synthesizes UMP in Ehrlich ascites cells.

Authors:  T W Traut
Journal:  Arch Biochem Biophys       Date:  1980-04-01       Impact factor: 4.013

9.  The overall synthesis of L-5,6-dihydroorotate by multienzymatic protein pyr1-3 from hamster cells. Kinetic studies, substrate channeling, and the effects of inhibitors.

Authors:  R I Christopherson; M E Jones
Journal:  J Biol Chem       Date:  1980-12-10       Impact factor: 5.157

10.  Characteristics of a bacteriophage T4-induced complex synthesizing deoxyribonucleotides.

Authors:  C S Chiu; K S Cook; G R Greenberg
Journal:  J Biol Chem       Date:  1982-12-25       Impact factor: 5.157

View more
  13 in total

1.  Generalization of the theory of transition times in metabolic pathways: a geometrical approach.

Authors:  M Lloréns; J C Nuño; Y Rodríguez; E Meléndez-Hevia; F Montero
Journal:  Biophys J       Date:  1999-07       Impact factor: 4.033

2.  Transition time control analysis of a glycolytic system under different glucose concentrations. Control of transition time versus control of flux.

Authors:  N V Torres; E Meléndez-Hevia
Journal:  Mol Cell Biochem       Date:  1992-06-26       Impact factor: 3.396

3.  Analysis and characterization of transition states in metabolic systems. Transition times and the passivity of the output flux.

Authors:  N V Torres; J Sicilia; E Meléndez-Hevia
Journal:  Biochem J       Date:  1991-05-15       Impact factor: 3.857

4.  Enzyme kinetics and metabolic control. A method to test and quantify the effect of enzymic properties on metabolic variables.

Authors:  L Acerenza; H Kacser
Journal:  Biochem J       Date:  1990-08-01       Impact factor: 3.857

5.  Integration of temporal analysis and control analysis of metabolic systems.

Authors:  J S Easterby
Journal:  Biochem J       Date:  1990-07-01       Impact factor: 3.857

6.  Control analysis of transition times in metabolic systems.

Authors:  E Meléndez-Hevia; N V Torres; J Sicilia; H Kacser
Journal:  Biochem J       Date:  1990-01-01       Impact factor: 3.857

7.  Transient times in linear metabolic pathways under constant affinity constraints.

Authors:  M Lloréns; J C Nuño; F Montero
Journal:  Biochem J       Date:  1997-10-15       Impact factor: 3.857

8.  Control analysis of transit time for free and enzyme-bound metabolites: physiological and evolutionary significance of metabolic response times.

Authors:  M Cascante; E Meléndez-Hevia; B Kholodenko; J Sicilia; H Kacser
Journal:  Biochem J       Date:  1995-06-15       Impact factor: 3.857

9.  How the global structure of protein interaction networks evolves.

Authors:  Andreas Wagner
Journal:  Proc Biol Sci       Date:  2003-03-07       Impact factor: 5.349

10.  Absolute metabolite concentrations and implied enzyme active site occupancy in Escherichia coli.

Authors:  Bryson D Bennett; Elizabeth H Kimball; Melissa Gao; Robin Osterhout; Stephen J Van Dien; Joshua D Rabinowitz
Journal:  Nat Chem Biol       Date:  2009-06-28       Impact factor: 15.040

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.